Literature DB >> 10978608

Is it possible to differentiate mtDNA by means of HVIII in samples that cannot be distinguished by sequencing the HVI and HVII regions?

S Lutz1, H Wittig, H J Weisser, J Heizmann, A Junge, N Dimo-Simonin, W Parson, J Edelmann, K Anslinger, S Jung, C Augustin.   

Abstract

The mitochondrial control region includes three so-called hypervariable (HV) regions, in which the polymorphic positions show a particularly high frequency. According to a population study of 200 unrelated individuals from Germany, HVI (positions 16,024-16,365, according to Anderson) showed 88 variable positions in a total length of 342 bp (26%) and HVII (positions 73-340) displayed 65 mutable sites in 268 bp (24%). HVIII (positions 438-574) exhibited a slightly lower variability, with 25 polymorphic sites within 137 bp (18%), but contrasted clearly with the background, which showed variability rates of only 7% (positions 16,366-16,569, 1-72) and 3% (positions 341-437), respectively. At present, the displacement (D)-loop database in Magdeburg comprises 904 sequences of the mitochondrial HVI region and HVII region from Germans, Austrians and Swiss. By means of this material, the extent to which the mtDNA sequences that do not differ in the HVI and HVII regions can be differentiated by additionally sequencing HVIII was investigated.

Mesh:

Substances:

Year:  2000        PMID: 10978608     DOI: 10.1016/s0379-0738(00)00222-x

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  14 in total

1.  Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians.

Authors:  Michael D Coble; Rebecca S Just; Jennifer E O'Callaghan; Ilona H Letmanyi; Christine T Peterson; Jodi A Irwin; Thomas J Parsons
Journal:  Int J Legal Med       Date:  2004-02-04       Impact factor: 2.686

2.  Mitochondrial DNA CA dinucleotide repeats in Koreans: the presence of length heteroplasmy.

Authors:  Ukhee Chung; Hwan Young Lee; Ji-Eun Yoo; Myung Jin Park; Kyoung-Jin Shin
Journal:  Int J Legal Med       Date:  2004-09-17       Impact factor: 2.686

3.  Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control.

Authors:  Hwan Young Lee; Ji-Eun Yoo; Myung Jin Park; Ukhee Chung; Kyoung-Jin Shin
Journal:  Int J Legal Med       Date:  2005-09-22       Impact factor: 2.686

4.  Hungarian mtDNA population databases from Budapest and the Baranya county Roma.

Authors:  Jodi Irwin; Balazs Egyed; Jessica Saunier; Gabriella Szamosi; Jennifer O'Callaghan; Zsolt Padar; Thomas J Parsons
Journal:  Int J Legal Med       Date:  2006-12-22       Impact factor: 2.686

5.  Forensic mass screening using mtDNA.

Authors:  Reinhard Szibor; Ines Plate; Herrmann Schmitter; Holger Wittig; Dieter Krause
Journal:  Int J Legal Med       Date:  2006-04-01       Impact factor: 2.686

6.  Mitochondrial DNA control region diversity in a population from Espirito Santo state, Brazil.

Authors:  Naiara M Sanches; Greiciane G Paneto; Raquel F Figueiredo; Aline O de Mello; Regina M B Cicarelli
Journal:  Mol Biol Rep       Date:  2014-07-05       Impact factor: 2.316

7.  Complete mitogenome data for the Serbian population: the contribution to high-quality forensic databases.

Authors:  Slobodan Davidovic; Boris Malyarchuk; Tomasz Grzybowski; Jelena M Aleksic; Miroslava Derenko; Andrey Litvinov; Urszula Rogalla-Ładniak; Milena Stevanovic; Natasa Kovacevic-Grujicic
Journal:  Int J Legal Med       Date:  2020-06-06       Impact factor: 2.686

8.  Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties.

Authors:  Basak B Ural; Stephen T Yeung; Payal Damani-Yokota; Joseph C Devlin; Maren de Vries; Paola Vera-Licona; Tasleem Samji; Catherine M Sawai; Geunhyo Jang; Oriana A Perez; Quynh Pham; Leigh Maher; P'ng Loke; Meike Dittmann; Boris Reizis; Kamal M Khanna
Journal:  Sci Immunol       Date:  2020-03-27

9.  Hypervariable region polymorphism of mtDNA of recurrent oral ulceration in Chinese.

Authors:  Mao Sun; Shan-Min Fu; Li-Feng Wang; Guang-Ying Dong; Dan Wu; Guo-Xia Wang; Yuanming Wu
Journal:  PLoS One       Date:  2012-09-19       Impact factor: 3.240

10.  Mitochondrial D-loop (CA)n repeat length heteroplasmy: frequency in a German population sample and inheritance studies in two pedigrees.

Authors:  Reinhard Szibor; Ines Plate; Marielle Heinrich; Mathias Michael; Rüdiger Schöning; Holger Wittig; Sabine Lutz-Bonengel
Journal:  Int J Legal Med       Date:  2006-04-28       Impact factor: 2.791

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.