Literature DB >> 10978303

The age of a unique event polymorphism.

L Markovtsova1, P Marjoram, S Tavaré.   

Abstract

We develop a Markov chain Monte Carlo approach for estimating the distribution of the age of a mutation that is assumed to have arisen just once in the history of the population of interest. We assume that in addition to the presence or absence of this mutation in a sample of chromosomes, we have DNA sequence data from a region completely linked to the mutant site. We apply our method to a mitochondrial data set in which the DNA sequence data come from hypervariable region I and the mutation of interest is the 9-bp region V deletion.

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Year:  2000        PMID: 10978303      PMCID: PMC1461247     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  17 in total

1.  Multiple origins of the mtDNA 9-bp deletion in populations of South India.

Authors:  W S Watkins; M Bamshad; M E Dixon; B Bhaskara Rao; J M Naidu; P G Reddy; B V Prasad; P K Das; P C Reddy; P B Gai; A Bhanu; Y S Kusuma; J K Lum; P Fischer; L B Jorde
Journal:  Am J Phys Anthropol       Date:  1999-06       Impact factor: 2.868

Review 2.  Coalescents and genealogical structure under neutrality.

Authors:  P Donnelly; S Tavaré
Journal:  Annu Rev Genet       Date:  1995       Impact factor: 16.830

3.  Genealogical inference from microsatellite data.

Authors:  I J Wilson; D J Balding
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

4.  Maximum likelihood estimation of population growth rates based on the coalescent.

Authors:  M K Kuhner; J Yamato; J Felsenstein
Journal:  Genetics       Date:  1998-05       Impact factor: 4.562

5.  Allelic disequilibrium and allele frequency distribution as a function of social and demographic history.

Authors:  E A Thompson; J V Neel
Journal:  Am J Hum Genet       Date:  1997-01       Impact factor: 11.025

6.  Estimating the age of alleles by use of intraallelic variability.

Authors:  M Slatkin; B Rannala
Journal:  Am J Hum Genet       Date:  1997-02       Impact factor: 11.025

7.  Inferring coalescence times from DNA sequence data.

Authors:  S Tavaré; D J Balding; R C Griffiths; P Donnelly
Journal:  Genetics       Date:  1997-02       Impact factor: 4.562

8.  mtDNA control-region sequence variation suggests multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans.

Authors:  H Soodyall; L Vigilant; A V Hill; M Stoneking; T Jenkins
Journal:  Am J Hum Genet       Date:  1996-03       Impact factor: 11.025

9.  mtDNA sequences suggest a recent evolutionary divergence for Beringian and northern North American populations.

Authors:  G F Shields; A M Schmiechen; B L Frazier; A Redd; M I Voevoda; J K Reed; R H Ward
Journal:  Am J Hum Genet       Date:  1993-09       Impact factor: 11.025

10.  Evolutionary history of the COII/tRNALys intergenic 9 base pair deletion in human mitochondrial DNAs from the Pacific.

Authors:  A J Redd; N Takezaki; S T Sherry; S T McGarvey; A S Sofro; M Stoneking
Journal:  Mol Biol Evol       Date:  1995-07       Impact factor: 16.240

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  7 in total

1.  The effects of rate variation on ancestral inference in the coalescent.

Authors:  L Markovtsova; P Marjoram; S Tavaré
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Mutations as missing data: inferences on the ages and distributions of nonsynonymous and synonymous mutations.

Authors:  R Nielsen
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

3.  Markov chain Monte Carlo without likelihoods.

Authors:  Paul Marjoram; John Molitor; Vincent Plagnol; Simon Tavare
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

4.  Dating rare mutations from small samples with dense marker data.

Authors:  Luke C Gandolfo; Melanie Bahlo; Terence P Speed
Journal:  Genetics       Date:  2014-05-30       Impact factor: 4.562

5.  Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms.

Authors:  Chiara Romualdi; David Balding; Ivane S Nasidze; Gregory Risch; Myles Robichaux; Stephen T Sherry; Mark Stoneking; Mark A Batzer; Guido Barbujani
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

6.  Comparison of the effectiveness of microsatellites and SNP panels for genetic identification, traceability and assessment of parentage in an inbred Angus herd.

Authors:  María E Fernández; Daniel E Goszczynski; Juan P Lirón; Egle E Villegas-Castagnasso; Mónica H Carino; María V Ripoli; Andrés Rogberg-Muñoz; Diego M Posik; Pilar Peral-García; Guillermo Giovambattista
Journal:  Genet Mol Biol       Date:  2013-06-22       Impact factor: 1.771

7.  Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.

Authors:  Julia A Palacios; Amandine Véber; Lorenzo Cappello; Zhangyuan Wang; John Wakeley; Sohini Ramachandran
Journal:  Genetics       Date:  2019-09-11       Impact factor: 4.562

  7 in total

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