Literature DB >> 10977089

A pragmatic information extraction strategy for gathering data on genetic interactions.

D Proux1, F Rechenmann, L Julliard.   

Abstract

We present in this paper a pragmatic strategy to perform information extraction from biologic texts. Since the emergence of the information extraction field, techniques have evolved, become more robust and proved their efficiency on specific domains. We are using a combination of existing linguistic and knowledge processing tools to automatically extract information about gene interactions in the literature. Our ultimate goal is to build a network of gene interactions. The methodologies used and the current results are discussed in this paper.

Mesh:

Year:  2000        PMID: 10977089

Source DB:  PubMed          Journal:  Proc Int Conf Intell Syst Mol Biol        ISSN: 1553-0833


  6 in total

1.  Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.

Authors:  Soumya Raychaudhuri; Jeffrey T Chang; Patrick D Sutphin; Russ B Altman
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

2.  BioTagger-GM: a gene/protein name recognition system.

Authors:  Manabu Torii; Zhangzhi Hu; Cathy H Wu; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2008-12-11       Impact factor: 4.497

3.  PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine.

Authors:  Ian Donaldson; Joel Martin; Berry de Bruijn; Cheryl Wolting; Vicki Lay; Brigitte Tuekam; Shudong Zhang; Berivan Baskin; Gary D Bader; Katerina Michalickova; Tony Pawson; Christopher W V Hogue
Journal:  BMC Bioinformatics       Date:  2003-03-27       Impact factor: 3.169

4.  A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

Authors:  Domonkos Tikk; Philippe Thomas; Peter Palaga; Jörg Hakenberg; Ulf Leser
Journal:  PLoS Comput Biol       Date:  2010-07-01       Impact factor: 4.475

5.  Can bibliographic pointers for known biological data be found automatically? Protein interactions as a case study.

Authors:  C Blaschke; A Valencia
Journal:  Comp Funct Genomics       Date:  2001

6.  Extracting information automatically from biological literature.

Authors:  C Blaschke; R Hoffmann; J C Oliveros; A Valencia
Journal:  Comp Funct Genomics       Date:  2001
  6 in total

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