Literature DB >> 10975459

Identifying the proteome: software tools.

D Fenyö1.   

Abstract

The interest in proteomics has recently increased dramatically and proteomic methods are now applied to many problems in cell biology. The method of choice in proteomics for identifying and characterizing proteins is mass spectrometry combined with database searching. Software tools have been improved to increase the sensitivity of protein identification and methods for evaluating the search results have been incorporated

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Year:  2000        PMID： 10975459     DOI： 10.1016/s0958-1669(00)00115-4

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN： 0958-1669            Impact factor:   9.740


  19 in total

1.  Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques.

Authors:  K F Medzihradszky; H Leffler; M A Baldwin; A L Burlingame
Journal:  J Am Soc Mass Spectrom       Date:  2001-02       Impact factor: 3.109

2.  "De novo" sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry.

Authors:  Andrej Shevchenko; Igor Chernushevic; Anna Shevchenko; Matthias Wilm; Matthias Mann
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

Review 3.  Molecular biologist's guide to proteomics.

Authors:  Paul R Graves; Timothy A J Haystead
Journal:  Microbiol Mol Biol Rev       Date:  2002-03       Impact factor: 11.056

Review 4.  Proteomics as a tool to monitor plant-microbe endosymbioses in the rhizosphere.

Authors:  G Bestel-Corre; E Dumas-Gaudot; S Gianinazzi
Journal:  Mycorrhiza       Date:  2003-11-19       Impact factor: 3.387

Review 5.  Broad-based proteomic strategies: a practical guide to proteomics and functional screening.

Authors:  David R M Graham; Steven T Elliott; Jennifer E Van Eyk
Journal:  J Physiol       Date:  2004-12-20       Impact factor: 5.182

6.  Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns.

Authors:  Yingying Huang; Joseph M Triscari; George C Tseng; Ljiljana Pasa-Tolic; Mary S Lipton; Richard D Smith; Vicki H Wysocki
Journal:  Anal Chem       Date:  2005-09-15       Impact factor: 6.986

Review 7.  Proteome research based on modern liquid chromatography--tandem mass spectrometry: separation, identification and quantification.

Authors:  T Fröhlich; G J Arnold
Journal:  J Neural Transm (Vienna)       Date:  2006-07-13       Impact factor: 3.575

8.  Evidence for sequence scrambling and divergent H/D exchange reactions of doubly-charged isobaric b-type fragment ions.

Authors:  Behrooz Zekavat; Mahsan Miladi; Abdullah H Al-Fdeilat; Arpad Somogyi; Touradj Solouki
Journal:  J Am Soc Mass Spectrom       Date:  2013-12-18       Impact factor: 3.109

9.  Computational investigation and hydrogen/deuterium exchange of the fixed charge derivative tris(2,4,6-trimethoxyphenyl) phosphonium: implications for the aspartic acid cleavage mechanism.

Authors:  Kristin A Herrmann; Vicki H Wysocki; Erich R Vorpagel
Journal:  J Am Soc Mass Spectrom       Date:  2005-07       Impact factor: 3.109

10.  Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics.

Authors:  Adam J Liska; Andrej Shevchenko; Uri Pick; Adriana Katz
Journal:  Plant Physiol       Date:  2004-08-27       Impact factor: 8.340
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