Literature DB >> 10952196

Human L1 retrotransposition: insights and peculiarities learned from a cultured cell retrotransposition assay.

J V Moran1.   

Abstract

Long Interspersed Nuclear Elements (L1s or LINEs) are the most abundant retrotransposons in the human genome, and they comprise approximately 17% of DNA. L1 retrotransposition can be mutagenic, and deleterious insertions both in the germ-line and in somatic cells have resulted in disease. Recently, an assay was developed to monitor L1 retrotransposition in cultured human cells. This assay, for the first time, now allows for a systematic study of L1 retrotransposition at the molecular level. Here, I will review progress made in L1 biology during the past three years. In general, I will limit the discussion to studies conducted on human L1s. However, interesting parallels to rodent L1s and other non-LTR retrotransposons also will be discussed.

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Year:  1999        PMID: 10952196

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  17 in total

1.  Genome-wide targeted search for human specific and polymorphic L1 integrations.

Authors:  Anton Buzdin; Svetlana Ustyugova; Elena Gogvadze; Yuri Lebedev; Gerhard Hunsmann; Eugene Sverdlov
Journal:  Hum Genet       Date:  2003-02-25       Impact factor: 4.132

2.  Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.

Authors:  Ilgar Mamedov; Anastasia Batrak; Anton Buzdin; Elena Arzumanyan; Yuri Lebedev; Eugene D Sverdlov
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

3.  ATLAS: a system to selectively identify human-specific L1 insertions.

Authors:  Richard M Badge; Reid S Alisch; John V Moran
Journal:  Am J Hum Genet       Date:  2003-03-11       Impact factor: 11.025

4.  An element in the 3' untranslated region of human LINE-1 retrotransposon mRNA binds NXF1(TAP) and can function as a nuclear export element.

Authors:  Susan Lindtner; Barbara K Felber; Jørgen Kjems
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

5.  LINE-1 Cultured Cell Retrotransposition Assay.

Authors:  Huira C Kopera; Peter A Larson; John B Moldovan; Sandra R Richardson; Ying Liu; John V Moran
Journal:  Methods Mol Biol       Date:  2016

6.  Natural genetic variation caused by transposable elements in humans.

Authors:  E Andrew Bennett; Laura E Coleman; Circe Tsui; W Stephen Pittard; Scott E Devine
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

7.  Plug and play modular strategies for synthetic retrotransposons.

Authors:  Wenfeng An; Edward S Davis; Tina L Thompson; Kathryn A O'Donnell; Chih-Yung Lee; Jef D Boeke
Journal:  Methods       Date:  2009-05-28       Impact factor: 3.608

Review 8.  The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.

Authors:  Sandra R Richardson; Aurélien J Doucet; Huira C Kopera; John B Moldovan; José Luis Garcia-Perez; John V Moran
Journal:  Microbiol Spectr       Date:  2015-04

9.  L1 hybridization enrichment: a method for directly accessing de novo L1 insertions in the human germline.

Authors:  Peter Freeman; Catriona Macfarlane; Pamela Collier; Alec J Jeffreys; Richard M Badge
Journal:  Hum Mutat       Date:  2011-07-12       Impact factor: 4.878

10.  Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications.

Authors:  Nakarin Kitkumthorn; Apiwat Mutirangura
Journal:  Clin Epigenetics       Date:  2011-04-10       Impact factor: 6.551

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