Literature DB >> 10944357

On the distribution of the bulk-solvent correction parameters.

N M Glykos1, M Kokkinidis.   

Abstract

The distribution of the bulk-solvent correction parameters (B(sol), k(sol)) (as determined with an exponential scaling algorithm based on Babinet's principle) for 219 crystal structures deposited in the Protein Data Bank is presented. The distribution shows that (i) the range of values observed is far wider than the usually cited parameter range, (ii) the observed k(sol) values do not correlate with their assumed physical meaning and (iii) the two parameters are not independent and a reasonable agreement with the experimental data can be obtained through the application of a simple exponential function. These findings are interpreted in terms of the inability of the currently used algorithms to uncouple the values of the two parameters during macromolecular refinement.

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Year:  2000        PMID: 10944357     DOI: 10.1107/s0907444900006788

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  2 in total

Review 1.  The solvent component of macromolecular crystals.

Authors:  Christian X Weichenberger; Pavel V Afonine; Katherine Kantardjieff; Bernhard Rupp
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-04-30

2.  Combining X-ray and electron-microscopy data to solve crystal structures.

Authors:  Jorge Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  2 in total

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