Literature DB >> 10944263

A test of crystal structure prediction of small organic molecules.

J P Lommerse1, W D Motherwell, H L Ammon, J D Dunitz, A Gavezzotti, D W Hofmann, F J Leusen, W T Mooij, S L Price, B Schweizer, M U Schmidt, P Verwer, D E Williams.   

Abstract

A collaborative workshop was held in May 1999 at the Cambridge Crystallographic Data Centre to test how well currently available methods of crystal structure prediction perform when given only the atomic connectivity for an organic compound. A blind test was conducted on a selection of four compounds and a wide range of methodologies representing, the principal computer programs currently available were used. There were 11 participants who were allowed to propose at most three structures for each compound. No program gave consistently reliable results. However, seven proposed structures were close to an experimental one and were classified as "correct". One compound occurred in two polymorphs, but only one form was predicted correctly among the calculated structures. The basic problem with lattice energy based methods of crystal structure prediction is that many structures are found within a few kJ mol(-1) of the global minimum. The fine detail of the force-field methodology and parametrization influences the energy ranking within each method. Nevertheless, present methods may be useful in providing a set of structures as possible polymorphs for a given molecular structure.

Entities:  

Year:  2000        PMID: 10944263     DOI: 10.1107/s0108768100004584

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  26 in total

1.  Conformation-family Monte Carlo: a new method for crystal structure prediction.

Authors:  J Pillardy; Y A Arnautova; C Czaplewski; K D Gibson; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

2.  An algorithm to filter out packing arrangements based on steric clashes.

Authors:  Bohdan Koudelka; Pavla Capkova
Journal:  J Mol Model       Date:  2003-09-27       Impact factor: 1.810

3.  Exercises in prognostication: crystal structures and protein folding.

Authors:  Jack D Dunitz; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-27       Impact factor: 11.205

4.  A very short history of structure-based design: how did we get here and where do we need to go?

Authors:  Jeff Blaney
Journal:  J Comput Aided Mol Des       Date:  2011-12-11       Impact factor: 3.686

5.  The role of molecular structure in the crystal polymorphism of local anesthetic drugs: crystal polymorphism of local anesthetic drugs, part X.

Authors:  Andrea C Schmidt
Journal:  Pharm Res       Date:  2005-11-16       Impact factor: 4.200

Review 6.  Biomolecular force fields: where have we been, where are we now, where do we need to go and how do we get there?

Authors:  Pnina Dauber-Osguthorpe; A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

7.  Toward polarizable AMOEBA thermodynamics at fixed charge efficiency using a dual force field approach: application to organic crystals.

Authors:  Ian J Nessler; Jacob M Litman; Michael J Schnieders
Journal:  Phys Chem Chem Phys       Date:  2016-11-09       Impact factor: 3.676

8.  Unmasking a third polymorph of a benchmark crystal-structure-prediction compound.

Authors:  Saikat Roy; Adam J Matzger
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Synthesis and magnetic properties of the novel dithiadiazolyl radical, p-NCC6F4C6F4CNSSN*.

Authors:  Antonio Alberola; Robert J Less; Fernando Palacio; Christopher M Pask; Jeremy M Rawson
Journal:  Molecules       Date:  2004-08-31       Impact factor: 4.411

10.  Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field.

Authors:  Seonah Kim; Anita M Orendt; Marta B Ferraro; Julio C Facelli
Journal:  J Comput Chem       Date:  2009-10       Impact factor: 3.376

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