Literature DB >> 10940866

Metabolism of citric acid production by Aspergillus niger: model definition, steady-state analysis and constrained optimization of citric acid production rate.

F Alvarez-Vasquez1, C González-Alcón, N V Torres.   

Abstract

In an attempt to provide a rational basis for the optimization of citric acid production by A. niger, we developed a mathematical model of the metabolism of this filamentous fungus when in conditions of citric acid accumulation. The present model is based in a previous one, but extended with the inclusion of new metabolic processes and updated with currently available kinetic data. Among the different alternatives to represent the system behavior we have chosen the S-system representation within power-law formalism. This type of representation allows us to verify not only the ability of the model to exhibit a stable steady state of the integrated system but also the robustness and quality of the representation. The model analysis is shown to be self-consistent, with a stable steady state, and in good agreement with experimental evidence. Moreover, the model representation is sufficiently robust, as indicated by sensitivity and steady-state and dynamic analyses. From the steady-state results we concluded that the range of accuracy of the S-system representation is wide enough to model realistic deviations from the nominal steady state. The dynamic analysis indicated a reasonable response time, which provided further indication that the model is adequate. The extensive assessment of the reliability and quality of the model put us in a position to address questions of optimization of the system with respect to increased citrate production. We carried out the constrained optimization of A. niger metabolism with the goal of predicting an enzyme activity profile yielding the maximum rate of citrate production, while, at the same time, keeping all enzyme activities within predetermined, physiologically acceptable ranges. The optimization is based on a method described and tested elsewhere that utilizes the fact that the S-system representation of a metabolic system becomes linear at steady state, which allows application of linear programming techniques. Our results show that: (i) while the present profile of enzyme activities in A. niger at idiophase steady state yields high rates of citric acid production, it still leaves room for changes and suggests possible optimization of the activity profile to over five times the basal rate synthesis; (ii) when the total enzyme concentration is allowed to double its basal value, the citric acid production rate can be increased by more than 12-fold, and even larger values can be attained if the total enzyme concentration is allowed to increase even more (up to 50-fold when the total enzyme concentration may rise up to 10-fold the basal value); and (iii) the systematic search of the best combination of subsets of enzymes shows that, under all conditions assayed, a minimum of 13 enzymes need be modified if significant increases in citric acid are to be obtained. This implies that improvements by single enzyme modulation are unlikely, which is in agreement with the findings of some investigators in this and other fields. Copyright 2000 John Wiley & Sons, Inc.

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Year:  2000        PMID: 10940866     DOI: 10.1002/1097-0290(20001005)70:1<82::aid-bit10>3.0.co;2-v

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  16 in total

1.  Both decrease in ACL1 gene expression and increase in ICL1 gene expression in marine-derived yeast Yarrowia lipolytica expressing INU1 gene enhance citric acid production from inulin.

Authors:  Xiao-Yan Liu; Zhe Chi; Guang-Lei Liu; Catherine Madzak; Zhen-Ming Chi
Journal:  Mar Biotechnol (NY)       Date:  2012-05-06       Impact factor: 3.619

2.  Mitochondrial Citrate Transporters CtpA and YhmA Are Required for Extracellular Citric Acid Accumulation and Contribute to Cytosolic Acetyl Coenzyme A Generation in Aspergillus luchuensis mut. kawachii.

Authors:  Chihiro Kadooka; Kosuke Izumitsu; Masahira Onoue; Kayu Okutsu; Yumiko Yoshizaki; Kazunori Takamine; Masatoshi Goto; Hisanori Tamaki; Taiki Futagami
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

3.  Influence of dissolved oxygen concentration on intracellular pH for regulation of Aspergillus niger growth rate during citric acid fermentation in a stirred tank bioreactor.

Authors:  Ikram-Ul Haq; Sikander Ali; M A Qadeer
Journal:  Int J Biol Sci       Date:  2005-02-05       Impact factor: 6.580

Review 4.  The best models of metabolism.

Authors:  Eberhard O Voit
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-05-19

5.  LaeA Controls Citric Acid Production through Regulation of the Citrate Exporter-Encoding cexA Gene in Aspergillus luchuensis mut. kawachii.

Authors:  Chihiro Kadooka; Eri Nakamura; Kazuki Mori; Kayu Okutsu; Yumiko Yoshizaki; Kazunori Takamine; Masatoshi Goto; Hisanori Tamaki; Taiki Futagami
Journal:  Appl Environ Microbiol       Date:  2020-02-18       Impact factor: 4.792

6.  Identifying the preferred subset of enzymatic profiles in nonlinear kinetic metabolic models via multiobjective global optimization and Pareto filters.

Authors:  Carlos Pozo; Gonzalo Guillén-Gosálbez; Albert Sorribas; Laureano Jiménez
Journal:  PLoS One       Date:  2012-09-20       Impact factor: 3.240

7.  Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models.

Authors:  Carlos Pozo; Alberto Marín-Sanguino; Rui Alves; Gonzalo Guillén-Gosálbez; Laureano Jiménez; Albert Sorribas
Journal:  BMC Syst Biol       Date:  2011-08-25

8.  Multi-objective optimization of enzyme manipulations in metabolic networks considering resilience effects.

Authors:  Wu-Hsiung Wu; Feng-Sheng Wang; Maw-Shang Chang
Journal:  BMC Syst Biol       Date:  2011-09-19

9.  Optimization of biotechnological systems through geometric programming.

Authors:  Alberto Marin-Sanguino; Eberhard O Voit; Carlos Gonzalez-Alcon; Nestor V Torres
Journal:  Theor Biol Med Model       Date:  2007-09-26       Impact factor: 2.432

10.  Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift.

Authors:  Fernando Alvarez-Vasquez; Kellie J Sims; Eberhard O Voit; Yusuf A Hannun
Journal:  Theor Biol Med Model       Date:  2007-10-31       Impact factor: 2.432

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