Literature DB >> 10940258

Stress-induced structural transitions in DNA and proteins.

T R Strick1, J F Allemand, D Bensimon, V Croquette.   

Abstract

The ability to manipulate, stretch and twist biomolecules opens the way to an understanding of their structural transitions. We review some of the recently discovered stress-induced structural transitions in DNA as well as the application of single molecule manipulation techniques to DNA unzipping and to the study of protein folding/unfolding transitions.

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Year:  2000        PMID: 10940258     DOI: 10.1146/annurev.biophys.29.1.523

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  21 in total

1.  Localization of denaturation bubbles in random DNA sequences.

Authors:  Terence Hwa; Enzo Marinari; Kim Sneppen; Lei-han Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-02       Impact factor: 11.205

Review 2.  Stretching and imaging single DNA molecules and chromatin.

Authors:  Jordanka Zlatanova; Sanford H Leuba
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

Review 3.  Mechanics and imaging of single DNA molecules.

Authors:  M Hegner; W Grange
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

Authors:  Andrey Revyakin; Richard H Ebright; Terence R Strick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

5.  DNA overstretching transition: ionic strength effects.

Authors:  Olli Punkkinen; Per Lyngs Hansen; Ling Miao; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

6.  E. coli Gyrase Fails to Negatively Supercoil Diaminopurine-Substituted DNA.

Authors:  Mónica Fernández-Sierra; Qing Shao; Chandler Fountain; Laura Finzi; David Dunlap
Journal:  J Mol Biol       Date:  2015-04-19       Impact factor: 5.469

7.  Single-molecule atomic force spectroscopy reveals that DnaD forms scaffolds and enhances duplex melting.

Authors:  Wenke Zhang; Cristina Machón; Alberto Orta; Nicola Phillips; Clive J Roberts; Stephanie Allen; Panos Soultanas
Journal:  J Mol Biol       Date:  2008-02-02       Impact factor: 5.469

8.  Measuring intermolecular rupture forces with a combined TIRF-optical trap microscope and DNA curtains.

Authors:  Ja Yil Lee; Feng Wang; Teresa Fazio; Shalom Wind; Eric C Greene
Journal:  Biochem Biophys Res Commun       Date:  2012-09-04       Impact factor: 3.575

Review 9.  At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?

Authors:  Shina C L Kamerlin; Arieh Warshel
Journal:  Proteins       Date:  2010-05-01

10.  In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form.

Authors:  Graham L Randall; Lynn Zechiedrich; B Montgomery Pettitt
Journal:  Nucleic Acids Res       Date:  2009-07-08       Impact factor: 16.971

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