Literature DB >> 10935973

Determination of the sedimentation coefficient distribution by least-squares boundary modeling.

P Schuck1, P Rossmanith.   

Abstract

A new method is presented for the calculation of apparent sedimentation coefficient distributions g*(s) for the size-distribution analysis of polymers in sedimentation velocity experiments. Direct linear least-squares boundary modeling by a superposition of sedimentation profiles of ideal nondiffusing particles is employed. It can be combined with algebraic noise decomposition techniques for the application to interference optical ultracentrifuge data at low loading concentrations with significant systematic noise components. Because of the use of direct boundary modeling, residuals are available for assessment of the quality of the fits and the consistency of the g*(s) distribution with the experimental data. The method can be combined with regularization techniques based on F statistics, such as used in the program CONTIN, or alternatively, the increment of s values can be adjusted empirically. The method is simple, has advantageous statistical properties, and reveals precise sedimentation coefficients. The new least-squares ls-g*(s) exhibits a very high robustness and resolution if data acquired over a large time interval are analyzed. This can result in a high resolution for large particles, and for samples with a high degree of heterogeneity. Because the method does not require a high frequency of scans, it can also be easily used in experiments with the absorbance optical scanning system. Published 2000 John Wiley & Sons, Inc.

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Year:  2000        PMID: 10935973     DOI: 10.1002/1097-0282(20001015)54:5<328::AID-BIP40>3.0.CO;2-P

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  111 in total

1.  Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.

Authors:  Peter Schuck; Matthew A Perugini; Noreen R Gonzales; Geoffrey J Howlett; Dieter Schubert
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

Review 2.  Modern analytical ultracentrifugation in protein science: a tutorial review.

Authors:  Jacob Lebowitz; Marc S Lewis; Peter Schuck
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

3.  An equilibrium model for linear and closed-loop amyloid fibril formation.

Authors:  Shuo Yang; Michael D W Griffin; Katrina J Binger; Peter Schuck; Geoffrey J Howlett
Journal:  J Mol Biol       Date:  2012-02-24       Impact factor: 5.469

4.  Localization and function of the membrane-bound riboflavin in the Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) from Vibrio cholerae.

Authors:  Marco S Casutt; Tamara Huber; René Brunisholz; Minli Tao; Günter Fritz; Julia Steuber
Journal:  J Biol Chem       Date:  2010-06-17       Impact factor: 5.157

5.  Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions.

Authors:  Aaron P Yamniuk; John A Newitt; Michael L Doyle; Fumio Arisaka; Anthony M Giannetti; Preston Hensley; David G Myszka; Fred P Schwarz; James A Thomson; Edward Eisenstein
Journal:  J Biomol Tech       Date:  2015-10-29

6.  Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity.

Authors:  Jia Ma; Huaying Zhao; Julia Sandmaier; J Alexander Liddle; Peter Schuck
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

7.  Absolute Amounts and Status of the Nrf2-Keap1-Cul3 Complex within Cells.

Authors:  Tatsuro Iso; Takafumi Suzuki; Liam Baird; Masayuki Yamamoto
Journal:  Mol Cell Biol       Date:  2016-11-28       Impact factor: 4.272

8.  Sedimentation velocity ultracentrifugation analysis for hydrodynamic characterization of G-quadruplex structures.

Authors:  Nichola C Garbett; Chongkham S Mekmaysy; Jonathan B Chaires
Journal:  Methods Mol Biol       Date:  2010

9.  A study of the ultrastructure of fragile-X-related proteins.

Authors:  Ljiljana Sjekloća; Petr V Konarev; John Eccleston; Ian A Taylor; Dmitri I Svergun; Annalisa Pastore
Journal:  Biochem J       Date:  2009-04-15       Impact factor: 3.857

10.  Fluorescence detection of a lipid-induced tetrameric intermediate in amyloid fibril formation by apolipoprotein C-II.

Authors:  Timothy M Ryan; Geoffrey J Howlett; Michael F Bailey
Journal:  J Biol Chem       Date:  2008-10-13       Impact factor: 5.157

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