Literature DB >> 10935760

Generic modeling of chemotactic based self-wiring of neural networks.

R Segev1, E Ben-Jacob.   

Abstract

The proper functioning of the nervous system depends critically on the intricate network of synaptic connections that are generated during the system development. During the network formation, the growth cones migrate through the embryonic environment to their targets using chemical communication. A major obstacle in the elucidation of fundamental principles underlying this self-wiring is the complexity of the system being analyzed. Hence much effort is devoted to in vitro experiments of simpler (two-dimensional) 2D model systems. In these experiments neurons are placed on Poly-L-Lysine (PLL) surfaces, so it is easier to monitor their self-wiring. We developed a model to reproduce the salient features of the 2D systems, inspired by the study of the growth of bacterial colonies and the aggregation of amoebae. We represent the neurons (each composed of cell's soma, neurites and growth cones) by active elements that capture the generic features of the real neurons. The model also incorporates stationary units representing the cells' soma and communicating walkers representing the growth cones. The stationary units send neurites one at a time, and respond to chemical signaling. The walkers migrate in response to chemotaxis substances emitted by the soma and communicate with each other and with the soma by means of chemotactic "feedback". The interplay between the chemo-repulsive and chemo-attractive responses is determined by the dynamics of the walker's internal energy which is controlled by the soma. These features enable the neurons to perform the complex task of self-wiring. We present numerical experiments of the model to demonstrate its ability to form fine structures in simple networks of few neurons. Our results raise two fundamental issues: (1) one needs to develop characterization methods (beyond number of connections per neuron) to distinguish the various possible networks; (2) what are the relations between the network organization and its computational properties and efficiency?

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Year:  2000        PMID: 10935760     DOI: 10.1016/s0893-6080(99)00084-2

Source DB:  PubMed          Journal:  Neural Netw        ISSN: 0893-6080


  12 in total

1.  A hybrid approach for the control of axonal outgrowth: preliminary simulation results.

Authors:  Gianni Ciofani; Pier Nicola Sergi; Jacopo Carpaneto; Silvestro Micera
Journal:  Med Biol Eng Comput       Date:  2010-10-06       Impact factor: 2.602

2.  Effects of random external background stimulation on network synaptic stability after tetanization: a modeling study.

Authors:  Zenas C Chao; Douglas J Bakkum; Daniel A Wagenaar; Steve M Potter
Journal:  Neuroinformatics       Date:  2005

3.  Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D.

Authors:  J Aćimović; T Mäki-Marttunen; R Havela; H Teppola; M-L Linne
Journal:  EURASIP J Bioinform Syst Biol       Date:  2011-03-08

4.  In silico framework to inform the design of repair constructs for peripheral nerve injury repair.

Authors:  S Laranjeira; G Pellegrino; K S Bhangra; J B Phillips; R J Shipley
Journal:  J R Soc Interface       Date:  2022-03-02       Impact factor: 4.118

5.  NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies.

Authors:  Randal A Koene; Betty Tijms; Peter van Hees; Frank Postma; Alexander de Ridder; Ger J A Ramakers; Jaap van Pelt; Arjen van Ooyen
Journal:  Neuroinformatics       Date:  2009-08-12

6.  Growth dynamics explain the development of spatiotemporal burst activity of young cultured neuronal networks in detail.

Authors:  Taras A Gritsun; Joost le Feber; Wim L C Rutten
Journal:  PLoS One       Date:  2012-09-19       Impact factor: 3.240

7.  Mathematical modelling and numerical simulation of the morphological development of neurons.

Authors:  Bruce P Graham; Arjen van Ooyen
Journal:  BMC Neurosci       Date:  2006-10-30       Impact factor: 3.288

8.  A hybrid computational model to predict chemotactic guidance of growth cones.

Authors:  Iolanda Morana Roccasalvo; Silvestro Micera; Pier Nicola Sergi
Journal:  Sci Rep       Date:  2015-06-18       Impact factor: 4.379

9.  Multi-phasic bi-directional chemotactic responses of the growth cone.

Authors:  Honda Naoki; Makoto Nishiyama; Kazunobu Togashi; Yasunobu Igarashi; Kyonsoo Hong; Shin Ishii
Journal:  Sci Rep       Date:  2016-11-03       Impact factor: 4.379

10.  A Model for Improving the Learning Curves of Artificial Neural Networks.

Authors:  Roberto L S Monteiro; Tereza Kelly G Carneiro; José Roberto A Fontoura; Valéria L da Silva; Marcelo A Moret; Hernane Borges de Barros Pereira
Journal:  PLoS One       Date:  2016-02-22       Impact factor: 3.240

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