Literature DB >> 10929123

Efficient insertion mutagenesis of Arabidopsis by tissue culture-induced activation of the tobacco retrotransposon Tto1.

H Okamoto1, H Hirochika.   

Abstract

The tobacco retrotransposon Tto1 is one of a few active retrotransposons in plants. Its transposition is activated by tissue culture and is primarily regulated at the transcriptional level. Here we demonstrate that Tto1 introduced in Arabidopsis is also activated by tissue culture. Transcription of Tto1 was induced by tissue culture and driven by its LTR promoter. Transposed copies of Tto1 were observed in almost all of the plants regenerated from the explants cultured for only 1 week. A total of 255 independent regenerated lines have been produced, and the average copy number of transposed Tto1 in these lines is estimated to be 3.2. Sequences flanking Tto1 were amplified by thermal asymmetric interlaced (TAIL)-PCR. Of 165 independent amplified products, 123 showed significant homology to known genes or hypothetical protein genes. The insertion sites of Tto1 are spread over all chromosomes and the target site sequence shows moderate consensus. Taken together, these results indicate that Tto1 can be used as a tool for efficient insertion mutagenesis of Arabidopsis which is especially suitable as a reverse genetics system.

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Year:  2000        PMID: 10929123     DOI: 10.1046/j.1365-313x.2000.00779.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  20 in total

1.  Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.

Authors:  Akio Miyao; Katsuyuki Tanaka; Kazumasa Murata; Hiromichi Sawaki; Shin Takeda; Kiyomi Abe; Yoriko Shinozuka; Katsura Onosato; Hirohiko Hirochika
Journal:  Plant Cell       Date:  2003-08       Impact factor: 11.277

2.  A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation.

Authors:  Catalina I Pislariu; Jeremy D Murray; JiangQi Wen; Viviane Cosson; RajaSekhara Reddy Duvvuru Muni; Mingyi Wang; Vagner A Benedito; Andry Andriankaja; Xiaofei Cheng; Ivone Torres Jerez; Samuel Mondy; Shulan Zhang; Mark E Taylor; Million Tadege; Pascal Ratet; Kirankumar S Mysore; Rujin Chen; Michael K Udvardi
Journal:  Plant Physiol       Date:  2012-06-07       Impact factor: 8.340

3.  Introduction of the tobacco retrotransposon Tto1 into diploid potato.

Authors:  Takuma Ishizaki; Akira Kato
Journal:  Plant Cell Rep       Date:  2005-02-04       Impact factor: 4.570

4.  Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate.

Authors:  Gudrun Böhmdorfer; Ivo L Hofacker; Karin Garber; Srecko Jelenic; Viktoria Nizhynska; Hirohiko Hirochika; Peter F Stadler; Andreas Bachmair
Journal:  RNA       Date:  2005-08       Impact factor: 4.942

5.  Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons.

Authors:  Irina A Maksakova; Ying Zhang; Dixie L Mager
Journal:  Mol Cell Biol       Date:  2009-03-09       Impact factor: 4.272

6.  Chromosomal distribution of soybean retrotransposon SORE-1 suggests its recent preferential insertion into euchromatic regions.

Authors:  Kenta Nakashima; Jun Abe; Akira Kanazawa
Journal:  Chromosome Res       Date:  2018-05-22       Impact factor: 5.239

7.  Active retrotransposons are a common feature of grass genomes.

Authors:  C M Vicient; M J Jääskeläinen; R Kalendar; A H Schulman
Journal:  Plant Physiol       Date:  2001-03       Impact factor: 8.340

8.  Transgenerational phenotypic and epigenetic changes in response to heat stress in Arabidopsis thaliana.

Authors:  Zoë Migicovsky; Youli Yao; Igor Kovalchuk
Journal:  Plant Signal Behav       Date:  2014-02-10

9.  CIRE1, a novel transcriptionally active Ty1-copia retrotransposon from Citrus sinensis.

Authors:  Laura Rico-Cabanas; José A Martínez-Izquierdo
Journal:  Mol Genet Genomics       Date:  2007-01-10       Impact factor: 3.291

10.  Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.

Authors:  Sayuri Tsukahara; Akira Kawabe; Akie Kobayashi; Tasuku Ito; Tomoyuki Aizu; Tadasu Shin-i; Atsushi Toyoda; Asao Fujiyama; Yoshiaki Tarutani; Tetsuji Kakutani
Journal:  Genes Dev       Date:  2012-03-19       Impact factor: 11.361

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