Literature DB >> 10927267

Algorithms for deriving crystallographic space-group information.

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Abstract

Algorithms are presented for three-dimensional crystallographic space groups, handling tasks such as the generation of symmetry operations, the characterization of symmetry operations (determination of rotation-part type, axis direction, sense of rotation, screw or glide part and location part), the determination of space-group type [identified by the space-group number of the International Tables for Crystallography (Dordrecht: Kluwer Academic Publishers)] and the generation of structure-seminvariant vectors and moduli. The latter are an algebraic description of allowed origin shifts, which are important in crystal structure determination methods or for comparing crystal structures. The space-group type determination produces a change-of-basis matrix which transforms a given space-group representation to the standard one according to the International Tables for Crystallography. The algorithms were implemented and tested using the SgInfo library. The source code is free for non-commercial applications.

Year:  1999        PMID: 10927267     DOI: 10.1107/s0108767398010186

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  8 in total

1.  Robust indexing for automatic data collection.

Authors:  Nicholas K Sauter; Ralf W Grosse-Kunstleve; Paul D Adams
Journal:  J Appl Crystallogr       Date:  2004-05-11       Impact factor: 3.304

2.  Detection and correction of underassigned rotational symmetry prior to structure deposition.

Authors:  Billy K Poon; Ralf W Grosse-Kunstleve; Peter H Zwart; Nicholas K Sauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

3.  Exact direct-space asymmetric units for the 230 crystallographic space groups.

Authors:  Ralf W Grosse-Kunstleve; Buddy Wong; Marat Mustyakimov; Paul D Adams
Journal:  Acta Crystallogr A       Date:  2011-03-31       Impact factor: 2.290

4.  Computing stoichiometric molecular composition from crystal structures.

Authors:  Saulius Gražulis; Andrius Merkys; Antanas Vaitkus; Mykolas Okulič-Kazarinas
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

5.  An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data.

Authors:  Laurent P René de Cotret; Martin R Otto; Mark J Stern; Bradley J Siwick
Journal:  Adv Struct Chem Imaging       Date:  2018-09-22

6.  Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place.

Authors:  Jeffrey J Headd; Robert M Immormino; Daniel A Keedy; Paul Emsley; David C Richardson; Jane S Richardson
Journal:  J Struct Funct Genomics       Date:  2008-11-11

7.  Automatic multiple-zone rigid-body refinement with a large convergence radius.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Alexandre Urzhumtsev; Paul D Adams
Journal:  J Appl Crystallogr       Date:  2009-07-16       Impact factor: 3.304

8.  Insightful classification of crystal structures using deep learning.

Authors:  Angelo Ziletti; Devinder Kumar; Matthias Scheffler; Luca M Ghiringhelli
Journal:  Nat Commun       Date:  2018-07-17       Impact factor: 14.919

  8 in total

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