Literature DB >> 10921905

A transcriptional insulator at the imprinted H19/Igf2 locus.

C R Kaffer1, M Srivastava, K Y Park, E Ives, S Hsieh, J Batlle, A Grinberg, S P Huang, K Pfeifer.   

Abstract

Igf2 and H19 exhibit parent-of-origin-specific monoallelic expression. H19 is expressed from the maternal chromosome and Igf2 from the paternal. The two genes share enhancer elements and monoallelic expression of both genes is dependent on cis-acting sequences upstream of the H19 promoter. In this work we examine the mechanisms by which this region silences the maternal Igf2 allele and we demonstrate that deletion of this region can result in high levels of activation of both H19 and Igf2 from a single chromosome. Moreover, by inserting this cis element between a promoter and its enhancer at a heterologous position, we demonstrate that the sequences carry both insulator activity and the ability to be stably imprinted. We also characterize the insulator in vitro and show that it is neither enhancer nor promoter specific.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10921905      PMCID: PMC316810     

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  45 in total

Review 1.  Putting boundaries on silence.

Authors:  F L Sun; S C Elgin
Journal:  Cell       Date:  1999-11-24       Impact factor: 41.582

2.  H19 and Igf2 monoallelic expression is regulated in two distinct ways by a shared cis acting regulatory region upstream of H19.

Authors:  M Srivastava; S Hsieh; A Grinberg; L Williams-Simons; S P Huang; K Pfeifer
Journal:  Genes Dev       Date:  2000-05-15       Impact factor: 11.361

3.  Targeted insertion of exogenous DNA into the eukaryotic genome by the Cre recombinase.

Authors:  B Sauer; N Henderson
Journal:  New Biol       Date:  1990-05

4.  The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains.

Authors:  A Udvardy; E Maine; P Schedl
Journal:  J Mol Biol       Date:  1985-09-20       Impact factor: 5.469

5.  Two regulatory domains flank the mouse H19 gene.

Authors:  H Yoo-Warren; V Pachnis; R S Ingram; S M Tilghman
Journal:  Mol Cell Biol       Date:  1988-11       Impact factor: 4.272

6.  Single nucleotide primer extension to detect genetic diseases: experimental application to hemophilia B (factor IX) and cystic fibrosis genes.

Authors:  M N Kuppuswamy; J W Hoffmann; C K Kasper; S G Spitzer; S L Groce; S P Bajaj
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-15       Impact factor: 11.205

7.  Parental-origin-specific epigenetic modification of the mouse H19 gene.

Authors:  A C Ferguson-Smith; H Sasaki; B M Cattanach; M A Surani
Journal:  Nature       Date:  1993-04-22       Impact factor: 49.962

8.  DNA position-specific repression of transcription by a Drosophila zinc finger protein.

Authors:  P K Geyer; V G Corces
Journal:  Genes Dev       Date:  1992-10       Impact factor: 11.361

9.  Parental imprinting studied by allele-specific primer extension after PCR: paternal X chromosome-linked genes are transcribed prior to preferential paternal X chromosome inactivation.

Authors:  J Singer-Sam; V Chapman; J M LeBon; A D Riggs
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

10.  The su(Hw) protein insulates expression of the Drosophila melanogaster white gene from chromosomal position-effects.

Authors:  R R Roseman; V Pirrotta; P K Geyer
Journal:  EMBO J       Date:  1993-02       Impact factor: 11.598

View more
  63 in total

Review 1.  Mechanisms of genomic imprinting.

Authors:  K Pfeifer
Journal:  Am J Hum Genet       Date:  2000-09-05       Impact factor: 11.025

2.  The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains.

Authors:  Vinod Pant; Piero Mariano; Chandrasekhar Kanduri; Anita Mattsson; Victor Lobanenkov; Rainer Heuchel; Rolf Ohlsson
Journal:  Genes Dev       Date:  2003-03-01       Impact factor: 11.361

3.  Functional characterization of a testis-specific DNA binding activity at the H19/Igf2 imprinting control region.

Authors:  Aaron B Bowman; John M Levorse; Robert S Ingram; Shirley M Tilghman
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

4.  Role of CTCF binding sites in the Igf2/H19 imprinting control region.

Authors:  Piroska E Szabó; Shih-Huey E Tang; Francisco J Silva; Walter M K Tsark; Jeffrey R Mann
Journal:  Mol Cell Biol       Date:  2004-06       Impact factor: 4.272

5.  The H19 differentially methylated region marks the parental origin of a heterologous locus without gametic DNA methylation.

Authors:  Kye-Yoon Park; Elizabeth A Sellars; Alexander Grinberg; Sing-Ping Huang; Karl Pfeifer
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

6.  Allele-specific H3K79 Di- versus trimethylation distinguishes opposite parental alleles at imprinted regions.

Authors:  Purnima Singh; Li Han; Guillermo E Rivas; Dong-Hoon Lee; Thomas B Nicholson; Garrett P Larson; Taiping Chen; Piroska E Szabó
Journal:  Mol Cell Biol       Date:  2010-03-29       Impact factor: 4.272

7.  Functional characterization of a novel Ku70/80 pause site at the H19/Igf2 imprinting control region.

Authors:  David J Katz; Michael A Beer; John M Levorse; Shirley M Tilghman
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

8.  Developmental profile of H19 differentially methylated domain (DMD) deletion alleles reveals multiple roles of the DMD in regulating allelic expression and DNA methylation at the imprinted H19/Igf2 locus.

Authors:  Joanne L Thorvaldsen; Andrew M Fedoriw; Son Nguyen; Marisa S Bartolomei
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

9.  Methylation of imprinted IGF2 regions is associated with total, visceral, and hepatic adiposity in postmenopausal women.

Authors:  Min-Ae Song; Thomas Ernst; Maarit Tiirikainen; Jörg Tost; Lynne R Wilkens; Linda Chang; Laurence N Kolonel; Loïc Le Marchand; Unhee Lim
Journal:  Epigenetics       Date:  2018-10-02       Impact factor: 4.528

10.  Tissue-specific relationship of S-adenosylhomocysteine with allele-specific H19/Igf2 methylation and imprinting in mice with hyperhomocysteinemia.

Authors:  Melissa B Glier; Ying F Ngai; Dian C Sulistyoningrum; Rika E Aleliunas; Teodoro Bottiglieri; Angela M Devlin
Journal:  Epigenetics       Date:  2012-12-05       Impact factor: 4.528

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.