Literature DB >> 10909065

Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins.

D J Williams1, K B Hall.   

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Year:  2000        PMID: 10909065     DOI: 10.1016/s0076-6879(00)21201-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  13 in total

1.  Thermodynamics of 2'-ribose substitutions in UUCG tetraloops.

Authors:  D J Williams; J L Boots; K B Hall
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

2.  The macroscopic rate of nucleic acid translocation by hepatitis C virus helicase NS3h is dependent on both sugar and base moieties.

Authors:  Ali R Khaki; Cassandra Field; Shuja Malik; Anita Niedziela-Majka; Stephanie A Leavitt; Ruth Wang; Magdeleine Hung; Roman Sakowicz; Katherine M Brendza; Christopher J Fischer
Journal:  J Mol Biol       Date:  2010-05-06       Impact factor: 5.469

3.  Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations.

Authors:  Kathleen B Hall; D Jeremy Williams
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

4.  Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC.

Authors:  Shuja Shafi Malik; Evan Rich; Ramya Viswanathan; Bradley R Cairns; Christopher J Fischer
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

5.  Asymmetric regulation of bipolar single-stranded DNA translocation by the two motors within Escherichia coli RecBCD helicase.

Authors:  Fuqian Xie; Colin G Wu; Elizabeth Weiland; Timothy M Lohman
Journal:  J Biol Chem       Date:  2012-11-27       Impact factor: 5.157

6.  Single-stranded DNA translocation of E. coli UvrD monomer is tightly coupled to ATP hydrolysis.

Authors:  Eric J Tomko; Christopher J Fischer; Timothy M Lohman
Journal:  J Mol Biol       Date:  2012-02-14       Impact factor: 5.469

Review 7.  Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids.

Authors:  Eric J Tomko; Christopher J Fischer; Timothy M Lohman
Journal:  Methods       Date:  2010-04-03       Impact factor: 3.608

8.  General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding.

Authors:  Aaron L Lucius; Nasib K Maluf; Christopher J Fischer; Timothy M Lohman
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

9.  Kinetic mechanism of DNA translocation by the RSC molecular motor.

Authors:  Allen Eastlund; Shuja Shafi Malik; Christopher J Fischer
Journal:  Arch Biochem Biophys       Date:  2013-02-09       Impact factor: 4.013

10.  Influence of DNA end structure on the mechanism of initiation of DNA unwinding by the Escherichia coli RecBCD and RecBC helicases.

Authors:  Colin G Wu; Timothy M Lohman
Journal:  J Mol Biol       Date:  2008-07-16       Impact factor: 5.469

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