Literature DB >> 10909048

Physiological modeling with virtual cell framework.

J C Schaff1, B M Slepchenko, L M Loew.   

Abstract

This article describes a computational framework for cell biological modeling and simulation that is based on the mapping of experimental biochemical and electrophysiological data onto experimental images. The framework is designed to enable the construction of complex general models that encompass the general class of problems coupling reaction and diffusion.

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Year:  2000        PMID: 10909048     DOI: 10.1016/s0076-6879(00)21184-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  18 in total

Review 1.  Transport into and out of the nucleus.

Authors:  I G Macara
Journal:  Microbiol Mol Biol Rev       Date:  2001-12       Impact factor: 11.056

2.  Targeting of rough endoplasmic reticulum membrane proteins and ribosomes in invertebrate neurons.

Authors:  Melissa M Rolls; David H Hall; Martin Victor; Ernst H K Stelzer; Tom A Rapoport
Journal:  Mol Biol Cell       Date:  2002-05       Impact factor: 4.138

Review 3.  Use of virtual cell in studies of cellular dynamics.

Authors:  Boris M Slepchenko; Leslie M Loew
Journal:  Int Rev Cell Mol Biol       Date:  2010       Impact factor: 6.813

Review 4.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

5.  Developing models in virtual cell.

Authors:  Susana R Neves
Journal:  Sci Signal       Date:  2011-09-20       Impact factor: 8.192

6.  Continuous fluorescence microphotolysis and correlation spectroscopy using 4Pi microscopy.

Authors:  Anton Arkhipov; Jana Hüve; Martin Kahms; Reiner Peters; Klaus Schulten
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

7.  Coupling of the phosphatase activity of Ci-VSP to its voltage sensor activity over the entire range of voltage sensitivity.

Authors:  Souhei Sakata; Md Israil Hossain; Yasushi Okamura
Journal:  J Physiol       Date:  2011-04-04       Impact factor: 5.182

Review 8.  Virtual Cell: computational tools for modeling in cell biology.

Authors:  Diana C Resasco; Fei Gao; Frank Morgan; Igor L Novak; James C Schaff; Boris M Slepchenko
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-12-02

9.  Mechanism of the spatio-temporal regulation of Ras and Rap1.

Authors:  Yusuke Ohba; Kazuo Kurokawa; Michiyuki Matsuda
Journal:  EMBO J       Date:  2003-02-17       Impact factor: 11.598

10.  Cyclin aggregation and robustness of bio-switching.

Authors:  Boris M Slepchenko; Mark Terasaki
Journal:  Mol Biol Cell       Date:  2003-08-07       Impact factor: 4.138

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