Literature DB >> 10908712

Substrate binding and enzyme function investigated by infrared spectroscopy.

A Barth1, C Zscherp.   

Abstract

Protein conformational changes triggered by molecule binding are increasingly investigated by infrared spectroscopy often using caged compounds. Several examples of molecule-protein recognition studies are given, which focus on nucleotide binding to proteins. The investigation of enzyme mechanisms is illustrated in detail using the Ca(2+)-ATPase of the sarcoplasmic reticulum membrane as an example. It is shown that infrared spectroscopy provides valuable information on general aspects of enzyme function as well as on molecular details of molecule-protein interactions and the mechanism of catalysis.

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Year:  2000        PMID: 10908712     DOI: 10.1016/s0014-5793(00)01782-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Characterization of a new caged proton capable of inducing large pH jumps.

Authors:  Andreas Barth; John E T Corrie
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Accurate theoretical prediction of vibrational frequencies in an inhomogeneous dynamic environment: a case study of a glutamate molecule in water solution and in a protein-bound form.

Authors:  Kirill Speranskiy; Maria Kurnikova
Journal:  J Chem Phys       Date:  2004-07-15       Impact factor: 3.488

3.  Use of helper enzymes for ADP removal in infrared spectroscopic experiments: application to Ca2+-ATPase.

Authors:  Man Liu; Eeva-Liisa Karjalainen; Andreas Barth
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

4.  Ionic interactions at both inter-ring contact sites of GroEL are involved in transmission of the allosteric signal: a time-resolved infrared difference study.

Authors:  Begoña Sot; Fritzthof von Germar; Werner Mäntele; Jose María Valpuesta; Stefka G Taneva; Arturo Muga
Journal:  Protein Sci       Date:  2005-08-04       Impact factor: 6.725

5.  Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy.

Authors:  Alisa Rupenyan; Ivo H M van Stokkum; Jos C Arents; Rienk van Grondelle; Klaas Hellingwerf; Marie Louise Groot
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

6.  Phosphoenolpyruvate and Mg2+ binding to pyruvate kinase monitored by infrared spectroscopy.

Authors:  Saroj Kumar; Andreas Barth
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

7.  Interactions of phosphate groups of ATP and Aspartyl phosphate with the sarcoplasmic reticulum Ca2+-ATPase: an FTIR study.

Authors:  Man Liu; Maria Krasteva; Andreas Barth
Journal:  Biophys J       Date:  2005-09-16       Impact factor: 4.033

8.  Protonation and hydrogen bonding of Ca2+ site residues in the E2P phosphoenzyme intermediate of sarcoplasmic reticulum Ca2+-ATPase studied by a combination of infrared spectroscopy and electrostatic calculations.

Authors:  Julia Andersson; Karin Hauser; Eeva-Liisa Karjalainen; Andreas Barth
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

9.  Simultaneous Fitting of Absorption Spectra and Their Second Derivatives for an Improved Analysis of Protein Infrared Spectra.

Authors:  Maurizio Baldassarre; Chenge Li; Nadejda Eremina; Erik Goormaghtigh; Andreas Barth
Journal:  Molecules       Date:  2015-07-10       Impact factor: 4.411

  9 in total

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