Literature DB >> 10899787

Polymer principles of protein calorimetric two-state cooperativity.

H Kaya1, H S Chan.   

Abstract

The experimental calorimetric two-state criterion requires the van't Hoff enthalpy DeltaH(vH) around the folding/unfolding transition midpoint to be equal or very close to the calorimetric enthalpy DeltaH(cal) of the entire transition. We use an analytical model with experimental parameters from chymotrypsin inhibitor 2 to elucidate the relationship among several different van't Hoff enthalpies used in calorimetric analyses. Under reasonable assumptions, the implications of these DeltaH(vH)'s being approximately equal to DeltaH(cal) are equivalent: Enthalpic variations among denatured conformations in real proteins are much narrower than some previous lattice-model estimates, suggesting that the energy landscape theory "folding to glass transition temperature ratio" T(f) /T(g) may exceed 6.0 for real calorimetrically two-state proteins. Several popular three-dimensional lattice protein models, with different numbers of residue types in their alphabets, are found to fall short of the high experimental standard for being calorimetrically two-state. Some models postulate a multiple-conformation native state with substantial pre-denaturational energetic fluctuations well below the unfolding transition temperature, or predict a significant post-denaturational continuous conformational expansion of the denatured ensemble at temperatures well above the transition point, or both. These scenarios either disagree with experiments on protein size and dynamics, or are inconsistent with conventional interpretation of calorimetric data. However, when empirical linear baseline subtractions are employed, the resulting DeltaH(vH)/DeltaH(cal)'s for some models can be increased to values closer to unity, and baseline subtractions are found to correspond roughly to an operational definition of native-state conformational diversity. These results necessitate a re-assessment of theoretical models and experimental interpretations.

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Year:  2000        PMID: 10899787     DOI: 10.1002/1097-0134(20000901)40:4<637::aid-prot80>3.0.co;2-4

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  34 in total

1.  Nonglassy kinetics in the folding of a simple single-domain protein.

Authors:  B Gillespie; K W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state.

Authors:  Piotr Pokarowski; Andrzej Kolinski; Jeffrey Skolnick
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

4.  On hydrophobicity and conformational specificity in proteins.

Authors:  Erik Sandelin
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

5.  Solvent-amino acid interaction energies in three-dimensional-lattice Monte Carlo simulations of a model 27-mer protein: Folding thermodynamics and kinetics.

Authors:  Kai Leonhard; John M Prausnitz; Clayton J Radke
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

6.  Folding pathways of prion and doppel.

Authors:  Giovanni Settanni; Trinh Xuan Hoang; Cristian Micheletti; Amos Maritan
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

7.  Sparsely populated folding intermediates of the Fyn SH3 domain: matching native-centric essential dynamics and experiment.

Authors:  Jason E Ollerenshaw; Hüseyin Kaya; Hue Sun Chan; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-05       Impact factor: 11.205

8.  Folding simulations of a de novo designed protein with a betaalphabeta fold.

Authors:  Yifei Qi; Yongqi Huang; Huanhuan Liang; Zhirong Liu; Luhua Lai
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

9.  Wang-Landau simulation of Gō model molecules.

Authors:  Arne Böker; Wolfgang Paul
Journal:  Eur Phys J E Soft Matter       Date:  2016-01-27       Impact factor: 1.890

10.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

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