Literature DB >> 10891089

Insensitivity of perturbed carboxyl pK(a) values in the ovomucoid third domain to charge replacement at a neighboring residue.

W R Forsyth1, A D Robertson.   

Abstract

A number of carboxyl groups in turkey ovomucoid third domain (OMTKY3) have low pK(a) values. A previous study suggested that neighboring amino groups were primarily responsible for the low carboxyl pK(a) values. However, the expected elevation in pK(a) values for these amino groups was not observed. In the present study, site-directed mutagenesis is used to investigate the origins of perturbed carboxyl pK(a) values in OMTKY3. Electrostatic calculations suggest that Lys 34 has large effects, 0.4-0.6 unit, on Asp 7, Glu 10, and Glu 19 which are 5-11 A away from Lys 34. Two-dimensional (1)H NMR techniques were used to determine pK(a) values of the acidic residues in OMTKY3 mutants in which Lys 34 has been replaced with threonine and glutamine. Surprisingly, the pK(a) values in the mutants are very close to those of the wild-type protein. The insensitivity of the acidic residues to replacement of Lys 34 suggests that long-range electrostatic interactions play less of a role in perturbing carboxyl pK(a) values than originally thought. We hypothesize that hydrogen bonds play a key role in perturbing some of the carboxyl ionization equilibria in OMTKY3.

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Year:  2000        PMID: 10891089     DOI: 10.1021/bi992967p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

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Authors:  Kelly K Lee; Carolyn A Fitch; Bertrand García-Moreno E
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

2.  pH dependence of amide chemical shifts in natively disordered polypeptides detects medium-range interactions with ionizable residues.

Authors:  Mario Pujato; Clay Bracken; Romina Mancusso; Marcela Cataldi; María Luisa Tasayco
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

3.  An extensive thermodynamic characterization of the dimerization domain of the HIV-1 capsid protein.

Authors:  María C Lidón-Moya; Francisco N Barrera; Marta Bueno; Raúl Pérez-Jiménez; Javier Sancho; Mauricio G Mateu; José L Neira
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

4.  Accurate, conformation-dependent predictions of solvent effects on protein ionization constants.

Authors:  P Barth; T Alber; P B Harbury
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-14       Impact factor: 11.205

5.  Carboxyl pK(a) values, ion pairs, hydrogen bonding, and the pH-dependence of folding the hyperthermophile proteins Sac7d and Sso7d.

Authors:  Andrew T Clark; Kelley Smith; Ranjith Muhandiram; Stephen P Edmondson; John W Shriver
Journal:  J Mol Biol       Date:  2007-07-10       Impact factor: 5.469

6.  Side chain electrostatic interactions and pH-dependent expansion of the intrinsically disordered, highly acidic carboxyl-terminus of γ-tubulin.

Authors:  Brandon J Payliss; Jackie Vogel; Anthony K Mittermaier
Journal:  Protein Sci       Date:  2019-04-24       Impact factor: 6.725

7.  Uncovering the determinants of a highly perturbed tyrosine pKa in the active site of ketosteroid isomerase.

Authors:  Jason P Schwans; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-10-23       Impact factor: 3.162

8.  Using polarizable POSSIM force field and fuzzy-border continuum solvent model to calculate pK(a) shifts of protein residues.

Authors:  Ity Sharma; George A Kaminski
Journal:  J Comput Chem       Date:  2016-10-27       Impact factor: 3.376

9.  Reproducing basic pKa values for turkey ovomucoid third domain using a polarizable force field.

Authors:  Timothy H Click; George A Kaminski
Journal:  J Phys Chem B       Date:  2009-06-04       Impact factor: 2.991

10.  Rapid calculation of protein pKa values using Rosetta.

Authors:  Krishna Praneeth Kilambi; Jeffrey J Gray
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

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