Literature DB >> 10877354

The assignment and validation of metal oxidation states in the Cambridge Structural Database

.   

Abstract

A methodology has been developed for the semi-automatic assignment and checking of formal oxidation states for metal atoms in the majority of metallo-organic complexes stored in the Cambridge Structural Database (CSD). The method uses both chemical connectivity and bond-length data, via ligand donor group templates and bond-valence sums, respectively. In order to use bond-length data, the CSD program QUEST has been modified to allow the coordination sphere of metal atoms to be recalculated using user-defined criteria at search time. The new methodology has been used successfully to validate the +1, +2 and +3 oxidation states in 743 four-coordinate copper complexes in the CSD for which atomic coordinates are available in ca 99% of structures using one or other method, and both succeed for >86% of structures.

Entities:  

Year:  2000        PMID: 10877354     DOI: 10.1107/s0108768199015086

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  8 in total

1.  Recent developments in the methods and applications of the bond valence model.

Authors:  Ian David Brown
Journal:  Chem Rev       Date:  2009-12       Impact factor: 60.622

2.  Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.

Authors:  Heping Zheng; Mahendra D Chordia; David R Cooper; Maksymilian Chruszcz; Peter Müller; George M Sheldrick; Wladek Minor
Journal:  Nat Protoc       Date:  2013-12-19       Impact factor: 13.491

3.  Using collective knowledge to assign oxidation states of metal cations in metal-organic frameworks.

Authors:  Kevin Maik Jablonka; Daniele Ongari; Seyed Mohamad Moosavi; Berend Smit
Journal:  Nat Chem       Date:  2021-07-05       Impact factor: 24.427

4.  Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning.

Authors:  Muhamed Amin
Journal:  Photosynth Res       Date:  2022-07-27       Impact factor: 3.429

5.  The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations.

Authors:  Michelle F Schaffer; Guanya Peng; Bernhard Spingler; Joachim Schnabl; Meitian Wang; Vincent Olieric; Roland K O Sigel
Journal:  Int J Mol Sci       Date:  2016-06-27       Impact factor: 5.923

6.  Crystal structure of 2,5-di-hydroxy-terephthalic acid from powder diffraction data.

Authors:  Joshua D Vegetabile; James A Kaduk
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-09-30

7.  A Cyclen-Functionalized Cobalt-Substituted Sandwich-Type Tungstoarsenate with Versatility in Removal of Methylene Blue and Anti-ROS-Sensitive Tumor Cells.

Authors:  Jiai Hua; Xueman Wei; Yifeng Li; Lingzhi Li; Hui Zhang; Feng Wang; Changli Zhang; Xiang Ma
Journal:  Molecules       Date:  2022-09-30       Impact factor: 4.927

8.  Physicochemical Insight into Coordination Systems Obtained from Copper(II) Bromoacetate and 1,10-Phenanthroline.

Authors:  Ewelina Krejner; Tomasz Sierański; Marcin Świątkowski; Marta Bogdan; Rafał Kruszyński
Journal:  Molecules       Date:  2020-11-15       Impact factor: 4.411

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.