Literature DB >> 10872451

Structural motifs in RNA.

P B Moore1.   

Abstract

An RNA motif is a discrete sequence or combination of base juxtapositions found in naturally occurring RNAs in unexpectedly high abundance. Because all the motifs examined so far have three-dimensional structures independent of the context in which they are embedded, they are important components of the "kit" of structural elements from which RNAs are constructed. This review discusses the structures of the motifs that have been identified so far and speculates on the importance of their role in determining RNA conformation and their evolutionary origin.

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Year:  1999        PMID: 10872451     DOI: 10.1146/annurev.biochem.68.1.287

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  104 in total

1.  HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns.

Authors:  S Gräf; D Strothmann; S Kurtz; G Steger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.

Authors:  P Nissen; J A Ippolito; N Ban; P B Moore; T A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

3.  NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop.

Authors:  U Nagaswamy; X Gao; S A Martinis; G E Fox
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

4.  NCIR: a database of non-canonical interactions in known RNA structures.

Authors:  Uma Nagaswamy; Maia Larios-Sanz; James Hury; Shakaala Collins; Zhengdong Zhang; Qin Zhao; George E Fox
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  SCOR: a Structural Classification of RNA database.

Authors:  Peter S Klosterman; Makio Tamura; Stephen R Holbrook; Steven E Brenner
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Novel cross-strand three-purine stack of the highly conserved 5'-GA/AAG-5' internal loop at the 3'-end termini of Parvovirus genomes.

Authors:  S H Chou; K H Chin
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

7.  A computational approach to identify genes for functional RNAs in genomic sequences.

Authors:  R J Carter; I Dubchak; S R Holbrook
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

8.  Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

Authors:  Martin J Serra; John D Baird; Taraka Dale; Bridget L Fey; Kimberly Retatagos; Eric Westhof
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

9.  Polarizable force field for RNA based on the classical drude oscillator.

Authors:  Justin A Lemkul; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2018-12-15       Impact factor: 3.376

10.  Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server.

Authors:  Joseph D Yesselman; Rhiju Das
Journal:  Methods Mol Biol       Date:  2016
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