Literature DB >> 10871387

New chromatographic and biochemical strategies for quick preparative isolation of tRNA.

E Cayama1, A Yépez, F Rotondo, E Bandeira, A C Ferreras, F J Triana-Alonso.   

Abstract

A combination of hydrophobic chromatography on phenyl-Sepharose and reversed phase HPLC was used to purify individual tRNAs with high specific activity. The efficiency of chromatographic separation was enhanced by biochemical manipulations of the tRNA molecule, such as aminoacylation, formylation of the aminoacyl moiety and enzymatic deacylation. Optimal combinations are presented for three different cases. (i) tRNA(Phe) from Escherichia coli. This species was isolated by a combination of low pressure phenyl-Sepharose hydrophobic chromatography with RP-HPLC. (ii) tRNA(Ile) from E. coli: Aminoacylation increases the retention time for this tRNA in RP-HPLC. The recovered acylated intermediate is deacylated by reversion of the aminoacylation reaction and submitted to a second RP-HPLC run, in which deacylated tRNA(Ile) is recovered with high specific activity. (iii) tRNA(i)(Met) from Saccharomyces cerevisiae. The aminoacylated form of this tRNA is unstable. To increase stability, the aminoacylated form was formylated using E.coli: enzymes and, after one RP-HPLC step, the formylated derivative was deacylated using peptidyl-tRNA hydrolase from E.COLI: The tRNA(i)(Met) recovered after a second RP-HPLC run exhibited electrophoretic homogeneity and high specific activity upon aminoacylation. These combinations of chromatographic separation and biochemical modification can be readily adapted to the large-scale isolation of any particular tRNA.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10871387      PMCID: PMC102749          DOI: 10.1093/nar/28.12.e64

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  The small ribosomal subunit from Thermus thermophilus at 4.5 A resolution: pattern fittings and the identification of a functional site.

Authors:  A Tocilj; F Schlünzen; D Janell; M Glühmann; H A Hansen; J Harms; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  A simple method for isolating highly purified yeast phenylalanine transfer ribonucleic acid.

Authors:  E Wimmer; I H Maxwell; G M Tener
Journal:  Biochemistry       Date:  1968-07       Impact factor: 3.162

3.  Studies on polynucleotides. XCI. Yeast methionine transfer ribonucleic acid: purification, properties, and terminal nucleotide sequences.

Authors:  U L RajBhandary; H P Ghosh
Journal:  J Biol Chem       Date:  1969-03-10       Impact factor: 5.157

4.  Characterization of two species of methionine transfer ribonucleic acid from bakers' yeast.

Authors:  K Takeishi; T Ukita; S Nishimura
Journal:  J Biol Chem       Date:  1968-11-10       Impact factor: 5.157

5.  The behaviour of acetylphenylalanyl soluble ribonucleic acid in polyphenylalanine synthesis.

Authors:  A L Haenni; F Chapeville
Journal:  Biochim Biophys Acta       Date:  1966-01-18

6.  A column chromatographic procedure for the fractionation of s-RNA.

Authors:  J D Cherayil; R M Bock
Journal:  Biochemistry       Date:  1965-06       Impact factor: 3.162

7.  High-performance liquid chromatography of transfer RNAs. Separation of transfer RNAs from mammalian sources.

Authors:  R P Singhal
Journal:  J Chromatogr       Date:  1983-08-26

8.  Mixed-mode chromatographic matrices for the resolution of transfer ribonucleic acids.

Authors:  R Bischoff; L W McLaughlin
Journal:  J Chromatogr       Date:  1984-12-28

9.  The separation of soluble ribonucleic acids on benzoylated diethylaminoethylcellulose.

Authors:  I Gillam; S Millward; D Blew; M von Tigerstrom; E Wimmer; G M Tener
Journal:  Biochemistry       Date:  1967-10       Impact factor: 3.162

10.  Isolation of specific tRNAs using an ionic-hydrophobic mixed-mode chromatographic matrix.

Authors:  R Bischoff; L W McLaughlin
Journal:  Anal Biochem       Date:  1985-12       Impact factor: 3.365

View more
  14 in total

1.  A truncated aminoacyl-tRNA synthetase modifies RNA.

Authors:  Juan C Salazar; Alexandre Ambrogelly; Pamela F Crain; James A McCloskey; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

2.  Mass spectrometry-based detection of transfer RNAs by their signature endonuclease digestion products.

Authors:  Mahmud Hossain; Patrick A Limbach
Journal:  RNA       Date:  2006-12-28       Impact factor: 4.942

3.  Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

Authors:  Gong Zhang; Magdalena Hubalewska; Zoya Ignatova
Journal:  Nat Struct Mol Biol       Date:  2009-02-08       Impact factor: 15.369

4.  Top-down tandem mass spectrometry of tRNA via ion trap collision-induced dissociation.

Authors:  Teng-Yi Huang; Jian Liu; Scott A McLuckey
Journal:  J Am Soc Mass Spectrom       Date:  2009-12-28       Impact factor: 3.109

5.  A flexible, scalable method for preparation of homogeneous aminoacylated tRNAs.

Authors:  Jinwei Zhang; Adrian R Ferré-D'Amaré
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

6.  The 3' CCACCA sequence of tRNAAla(UGC) is the motif that is important in inducing Th1-like immune response, and this motif can be recognized by Toll-like receptor 3.

Authors:  Zhijun Wang; Li Xiang; Junjie Shao; Zhenghong Yuan
Journal:  Clin Vaccine Immunol       Date:  2006-07

7.  Gene ssfg_01967 (miaB) for tRNA modification influences morphogenesis and moenomycin biosynthesis in Streptomyces ghanaensis ATCC14672.

Authors:  Yuliia Sehin; Oksana Koshla; Yuriy Dacyuk; Ruoxia Zhao; Robert Ross; Maksym Myronovskyi; Patrick A Limbach; Andriy Luzhetskyy; Suzanne Walker; Victor Fedorenko; Bohdan Ostash
Journal:  Microbiology (Reading)       Date:  2018-12-13       Impact factor: 2.777

8.  Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP.

Authors:  Anett Unbehaun; Sergei I Borukhov; Christopher U T Hellen; Tatyana V Pestova
Journal:  Genes Dev       Date:  2004-12-15       Impact factor: 11.361

9.  Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products.

Authors:  Anita Durairaj; Patrick A Limbach
Journal:  Rapid Commun Mass Spectrom       Date:  2008-12       Impact factor: 2.419

10.  Structural basis for plazomicin antibiotic action and resistance.

Authors:  Tolou Golkar; Angelia V Bassenden; Krishnagopal Maiti; Dev P Arya; T Martin Schmeing; Albert M Berghuis
Journal:  Commun Biol       Date:  2021-06-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.