Literature DB >> 10869026

RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.

M Robinson-Rechavi1, D Huchon.   

Abstract

UNLABELLED: RRTree is a user-friendly program for comparing substitution rates between lineages of protein or DNA sequences, relative to an outgroup, through relative rate tests. Genetic diversity is taken into account through use of several sequences, and phylogenetic relations are integrated by topological weighting. AVAILABILITY: The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html CONTACT: marc.robinson@ens-lyon.fr

Mesh：

Substances：

Year:  2000        PMID： 10869026     DOI： 10.1093/bioinformatics/16.3.296

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  99 in total

1.  Host switching in Lyssavirus history from the Chiroptera to the Carnivora orders.

Authors:  H Badrane; N Tordo
Journal:  J Virol       Date:  2001-09       Impact factor: 5.103

2.  Phylogenetic position and peculiar genetic traits of a midgut bacterial symbiont of the stinkbug Parastrachia japonensis.

Authors:  Takahiro Hosokawa; Yoshitomo Kikuchi; Naruo Nikoh; Xian-Ying Meng; Mantaro Hironaka; Takema Fukatsu
Journal:  Appl Environ Microbiol       Date:  2010-05-07       Impact factor: 4.792

3.  Novel kingdom-level eukaryotic diversity in anoxic environments.

Authors:  Scott C Dawson; Norman R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

4.  A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians.

Authors:  I Ruiz-Trillo; J Paps; M Loukota; C Ribera; U Jondelius; J Baguna; M Riutort
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

5.  Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa.

Authors:  Cédric Berney; Jan Pawlowski
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

6.  Polyphyly of gut symbionts in stinkbugs of the family Cydnidae.

Authors:  Takahiro Hosokawa; Yoshitomo Kikuchi; Naruo Nikoh; Takema Fukatsu
Journal:  Appl Environ Microbiol       Date:  2012-04-27       Impact factor: 4.792

7.  A tandem duplication of manganese superoxide dismutase in Nosema bombycis and its evolutionary origins.

Authors:  Heng Xiang; Guoqing Pan; Charles R Vossbrinck; Ruizhi Zhang; Jinshan Xu; Tian Li; Zeyang Zhou; Cheng Lu; Zhonghuai Xiang
Journal:  J Mol Evol       Date:  2010-10-23       Impact factor: 2.395

8.  Diversity of symbiotic organs and bacterial endosymbionts of lygaeoid bugs of the families blissidae and lygaeidae (hemiptera: heteroptera: lygaeoidea).

Authors:  Stefan Martin Kuechler; Patricia Renz; Konrad Dettner; Siegfried Kehl
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

9.  Bacterial endosymbiont of the slender pigeon louse, Columbicola columbae, allied to endosymbionts of grain weevils and tsetse flies.

Authors:  Takema Fukatsu; Ryuichi Koga; Wendy A Smith; Kohjiiro Tanaka; Naruo Nikoh; Kayoko Sasaki-Fukatsu; Kazunori Yoshizawa; Colin Dale; Dale H Clayton
Journal:  Appl Environ Microbiol       Date:  2007-08-31       Impact factor: 4.792

10.  Selection on an antimicrobial peptide defensin in ants.

Authors:  Lumi Viljakainen; Pekka Pamilo
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395
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