Literature DB >> 10869023

PIR: a new resource for bioinformatics.

P B McGarvey1, H Huang, W C Barker, B C Orcutt, J S Garavelli, G Y Srinivasarao, L S Yeh, C Xiao, C H Wu.   

Abstract

UNLABELLED: The Protein Information Resource (PIR) has greatly expanded its Web site and developed a set of interactive search and analysis tools to facilitate the analysis, annotation, and functional identification of proteins. New search engines have been implemented to combine sequence similarity search results with database annotation information. The new PIR search systems have proved very useful in providing enriched functional annotation of protein sequences, determining protein superfamily-domain relationships, and detecting annotation errors in genomic database archives. AVAILABILITY: http://pir.georgetown.edu/. CONTACT: mcgarvey@nbrf.georgetown.edu

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Year:  2000        PMID: 10869023     DOI: 10.1093/bioinformatics/16.3.290

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  10 in total

1.  Protein Information Resource: a community resource for expert annotation of protein data.

Authors:  W C Barker; J S Garavelli; Z Hou; H Huang; R S Ledley; P B McGarvey; H W Mewes; B C Orcutt; F Pfeiffer; A Tsugita; C R Vinayaka; C Xiao; L S Yeh; C Wu
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Authors:  Cathy H Wu; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Robert S Ledley; Kali C Lewis; Hans-Werner Mewes; Bruce C Orcutt; Baris E Suzek; Akira Tsugita; C R Vinayaka; Lai-Su L Yeh; Jian Zhang; Winona C Barker
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Kinase pathway database: an integrated protein-kinase and NLP-based protein-interaction resource.

Authors:  Asako Koike; Yoshiyuki Kobayashi; Toshihisa Takagi
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

4.  Inclusion membrane proteins of Protochlamydia amoebophila UWE25 reveal a conserved mechanism for host cell interaction among the Chlamydiae.

Authors:  Eva Heinz; Daniel D Rockey; Jacqueline Montanaro; Karin Aistleitner; Michael Wagner; Matthias Horn
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

5.  Complete genomic sequence of Salmonella enterica serovar Enteritidis phage SE2.

Authors:  Birendra R Tiwari; Shukho Kim; Jungmin Kim
Journal:  J Virol       Date:  2012-07       Impact factor: 5.103

6.  A revised annotation and comparative analysis of Helicobacter pylori genomes.

Authors:  Ivo G Boneca; Hilde de Reuse; Jean-Charles Epinat; Maude Pupin; Agnès Labigne; Ivan Moszer
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

7.  Complete genome sequence of Pseudomonas aeruginosa lytic bacteriophage PA1O which resembles temperate bacteriophage D3112.

Authors:  Shukho Kim; Marzia Rahman; Jungmin Kim
Journal:  J Virol       Date:  2012-03       Impact factor: 5.103

8.  Identification of common genetic variants that account for transcript isoform variation between human populations.

Authors:  Wei Zhang; Shiwei Duan; Wasim K Bleibel; Steven A Wisel; R Stephanie Huang; Xiaolin Wu; Lijun He; Tyson A Clark; Tina X Chen; Anthony C Schweitzer; John E Blume; M Eileen Dolan; Nancy J Cox
Journal:  Hum Genet       Date:  2008-12-04       Impact factor: 4.132

9.  Epitope definition by proteomic similarity analysis: identification of the linear determinant of the anti-Dsg3 MAb 5H10.

Authors:  Alberta Lucchese; Abraham Mittelman; Mong-Shang Lin; Darja Kanduc; Animesh A Sinha
Journal:  J Transl Med       Date:  2004-12-11       Impact factor: 5.531

10.  Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells.

Authors:  Kirsti Laurila; Reija Autio; Lingjia Kong; Elisa Närvä; Samer Hussein; Timo Otonkoski; Riitta Lahesmaa; Harri Lähdesmäki
Journal:  BioData Min       Date:  2014-12-13       Impact factor: 2.522

  10 in total

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