Literature DB >> 10860834

Computational and experimental analysis identifies many novel human genes.

N Miyajima1, C B Burge, T Saito.   

Abstract

Because of advances in automation, human genomic sequences are being deposited in public databases at a dramatic rate. However, the process of detecting genes in these sequences is still something of an art. Here we describe the implementation and testing of a relatively straightforward computational approach, the Virtual Transcribed Sequence project, which analyzes their gene content using the gene prediction program GENSCAN (GENSCAN 1.0 1,2) in combination with similarity-based methods. This approach identifies many novel human genes not found even in EST databases. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10860834     DOI: 10.1006/bbrc.2000.2866

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  3 in total

1.  Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping.

Authors:  Ling-Hui Li; Jian-Chiuan Li; Yung-Feng Lin; Chung-Yen Lin; Chung-Yung Chen; Shih-Feng Tsai
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

2.  Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing.

Authors:  Jia Qian Wu; David Shteynberg; Manimozhiyan Arumugam; Richard A Gibbs; Michael R Brent
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

3.  Noncoding RNA gene detection using comparative sequence analysis.

Authors:  E Rivas; S R Eddy
Journal:  BMC Bioinformatics       Date:  2001-10-10       Impact factor: 3.169

  3 in total

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