Literature DB >> 10859367

Genome-wide scan for body composition in pigs reveals important role of imprinting.

D J de Koning1, A P Rattink, B Harlizius, J A van Arendonk, E W Brascamp, M A Groenen.   

Abstract

The role of imprinting in body composition was investigated in an experimental cross between Chinese Meishan pigs and commercial Dutch pigs. A whole-genome scan revealed significant evidence for five quantitative trait loci (QTL) affecting body composition, of which four were imprinted. Imprinting was tested with a statistical model that separated the expression of paternally and maternally inherited alleles. For back fat thickness, a paternally expressed QTL was found on Sus scrofa chromosome 2 (SSC2), and a Mendelian-expressed QTL was found on SSC7. In the same region of SSC7, a maternally expressed QTL affecting muscle depth was found. Chromosome 6 harbored a maternally expressed QTL on the short arm and a paternally expressed QTL on the long arm, both affecting intramuscular fat content. The individual QTL explained from 2% up to 10% of the phenotypic variance. The known homologies to human and mouse did not reveal positional candidate genes. This study demonstrates that testing for imprinting should become a standard procedure to unravel the genetic control of multifactorial traits.

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Year:  2000        PMID: 10859367      PMCID: PMC16650          DOI: 10.1073/pnas.140216397

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  The sins of the fathers and mothers: genomic imprinting in mammalian development.

Authors:  S M Tilghman
Journal:  Cell       Date:  1999-01-22       Impact factor: 41.582

2.  A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus.

Authors:  J T Jeon; O Carlborg; A Törnsten; E Giuffra; V Amarger; P Chardon; L Andersson-Eklund; K Andersson; I Hansson; K Lundström; L Andersson
Journal:  Nat Genet       Date:  1999-02       Impact factor: 38.330

3.  An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs.

Authors:  C Nezer; L Moreau; B Brouwers; W Coppieters; J Detilleux; R Hanset; L Karim; A Kvasz; P Leroy; M Georges
Journal:  Nat Genet       Date:  1999-02       Impact factor: 38.330

4.  A cluster of oppositely imprinted transcripts at the Gnas locus in the distal imprinting region of mouse chromosome 2.

Authors:  J Peters; S F Wroe; C A Wells; H J Miller; D Bodle; C V Beechey; C M Williamson; G Kelsey
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

Review 5.  Genetic dissection of complex traits.

Authors:  E S Lander; N J Schork
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

6.  A first-generation porcine whole-genome radiation hybrid map.

Authors:  R J Hawken; J Murtaugh; G H Flickinger; M Yerle; A Robic; D Milan; J Gellin; C W Beattie; L B Schook; L J Alexander
Journal:  Mamm Genome       Date:  1999-08       Impact factor: 2.957

7.  Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa).

Authors:  D J de Koning; L L Janss; A P Rattink; P A van Oers; B J de Vries; M A Groenen; J J van der Poel; P N de Groot; E W Brascamp; J A van Arendonk
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

8.  The analysis of parental origin of alleles may detect susceptibility loci for complex disorders.

Authors:  A D Paterson; D M Naimark; A Petronis
Journal:  Hum Hered       Date:  1999-07       Impact factor: 0.444

Review 9.  The major histocompatibility complex in swine.

Authors:  P Chardon; C Renard; M Vaiman
Journal:  Immunol Rev       Date:  1999-02       Impact factor: 12.988

10.  Genetic mapping of quantitative trait loci for growth and fatness in pigs.

Authors:  L Andersson; C S Haley; H Ellegren; S A Knott; M Johansson; K Andersson; L Andersson-Eklund; I Edfors-Lilja; M Fredholm; I Hansson
Journal:  Science       Date:  1994-03-25       Impact factor: 47.728

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  72 in total

1.  The imprinted gene and parent-of-origin effect database.

Authors:  I M Morison; C J Paton; S D Cleverley
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Imprinting analysis of porcine MAGEL2 gene in two fetal stages and association analysis with carcass traits.

Authors:  Ling Guo; Mu Qiao; Chao Wang; Rong Zheng; Yuan-Zhu Xiong; Chang-Yan Deng
Journal:  Mol Biol Rep       Date:  2011-06-03       Impact factor: 2.316

3.  On the detection of imprinted quantitative trait loci in experimental crosses of outbred species.

Authors:  Dirk-Jan de Koning; Henk Bovenhuis; Johan A M van Arendonk
Journal:  Genetics       Date:  2002-06       Impact factor: 4.562

4.  Characterization of genomic imprinting effects and patterns with parametric accelerated failure time model.

Authors:  Xiaojing Zhou; Ming Fang; Jiahan Li; Daniel R Prows; Runqing Yang
Journal:  Mol Genet Genomics       Date:  2011-12-06       Impact factor: 3.291

5.  Bayesian mapping of genome-wide epistatic imprinted loci for quantitative traits.

Authors:  Shize Li; Xin Wang; Jiahan Li; Tianfu Yang; Lingjiang Min; Yang Liu; Min Lin; Runqing Yang
Journal:  Theor Appl Genet       Date:  2012-02-16       Impact factor: 5.699

Review 6.  Regression-based quantitative trait loci mapping: robust, efficient and effective.

Authors:  Sara A Knott
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

Review 7.  The new field of epigenomics: implications for cancer and other common disease research.

Authors:  H T Bjornsson; H Cui; D Gius; M D Fallin; A P Feinberg
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2004

8.  Possible genomic imprinting of three human obesity-related genetic loci.

Authors:  Chuanhui Dong; Wei-Dong Li; Frank Geller; Lei Lei; Ding Li; Olga Y Gorlova; Johannes Hebebrand; Christopher I Amos; Robert D Nicholls; R Arlen Price
Journal:  Am J Hum Genet       Date:  2005-01-12       Impact factor: 11.025

9.  Sex-specific viability, sex linkage and dominance in genomic imprinting.

Authors:  Jeremy Van Cleve; Marcus W Feldman
Journal:  Genetics       Date:  2007-04-15       Impact factor: 4.562

10.  Investigation of four porcine candidate genes (H-FABP, MYOD1, UCP3 and MASTR) for meat quality traits in Large White pigs.

Authors:  Xuelei Han; Tengfei Jiang; Huawei Yang; Qingde Zhang; Weimin Wang; Bin Fan; Bang Liu
Journal:  Mol Biol Rep       Date:  2012-02-07       Impact factor: 2.316

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