Literature DB >> 10851191

From fold to function.

J Moult1, E Melamud.   

Abstract

A number of recent advances have been made in deriving function information from protein structure. A fold relationship to an already characterized protein will often allow general information about function to be deduced. More detailed information can be obtained using sequence relationships to already studied proteins. Methods of deducing function directly from structure, without the use of evolutionary relationships, are developing rapidly. All such methods may be used with models of protein structure, rather than with experimentally determined ones, but model accuracy imposes limitations. The rapid expansion of the structural genomics field has created a new urgency for improved methods of structure-based annotation of function.

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Year:  2000        PMID: 10851191     DOI: 10.1016/s0959-440x(00)00101-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  Structural studies of E73 from a hyperthermophilic archaeal virus identify the "RH3" domain, an elaborated ribbon-helix-helix motif involved in DNA recognition.

Authors:  Casey Schlenker; Anupam Goel; Brian P Tripet; Smita Menon; Taylor Willi; Mensur Dlakić; Mark J Young; C Martin Lawrence; Valérie Copié
Journal:  Biochemistry       Date:  2012-03-22       Impact factor: 3.162

2.  From protein structure to biochemical function?

Authors:  Roman A Laskowski; James D Watson; Janet M Thornton
Journal:  J Struct Funct Genomics       Date:  2003

Review 3.  Target selection and determination of function in structural genomics.

Authors:  James D Watson; Annabel E Todd; James Bray; Roman A Laskowski; Aled Edwards; Andrzej Joachimiak; Christine A Orengo; Janet M Thornton
Journal:  IUBMB Life       Date:  2003 Apr-May       Impact factor: 3.885

4.  A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.

Authors:  Ozlem Keskin; Chung-Jung Tsai; Haim Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

5.  Localization of binding sites in protein structures by optimization of a composite scoring function.

Authors:  Andrea Rossi; Marc A Marti-Renom; Andrej Sali
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

6.  Chimeric glutathione S-transferases containing inserts of kininogen peptides: potential novel protein therapeutics.

Authors:  Amber A Bentley; Sergei M Merkulov; Yi Peng; Rita Rozmarynowycz; Xiaoping Qi; Marianne Pusztai-Carey; William C Merrick; Vivien C Yee; Keith R McCrae; Anton A Komar
Journal:  J Biol Chem       Date:  2012-05-10       Impact factor: 5.157

7.  Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold.

Authors:  Eric T Larson; Dirk Reiter; Mark Young; C Martin Lawrence
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

Review 8.  Exploiting structural classifications for function prediction: towards a domain grammar for protein function.

Authors:  Benoît H Dessailly; Oliver C Redfern; Alison Cuff; Christine A Orengo
Journal:  Curr Opin Struct Biol       Date:  2009-04-22       Impact factor: 6.809

9.  Structure of D-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function.

Authors:  Paul Kraft; Daniel Kümmel; Andrea Oeckinghaus; George H Gauss; Blake Wiedenheft; Mark Young; C Martin Lawrence
Journal:  J Virol       Date:  2004-07       Impact factor: 5.103

10.  HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition.

Authors:  Pandurangan Sundaramurthy; Raashi Sreenivasan; Khader Shameer; Sunita Gakkhar; Ramanathan Sowdhamini
Journal:  Bioinformation       Date:  2011-12-10
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