Literature DB >> 10851185

Protein structure prediction in the postgenomic era.

D T Jones1.   

Abstract

As the number of completely sequenced genomes rapidly increases, the postgenomic problem of gene function identification becomes ever more pressing. Predicting the structures of proteins encoded by genes of interest is one possible means to glean subtle clues as to the functions of these proteins. There are limitations to this approach to gene identification and a survey of the expected reliability of different protein structure prediction techniques has been undertaken.

Mesh:

Substances:

Year:  2000        PMID: 10851185     DOI: 10.1016/s0959-440x(00)00099-3

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  PALI-a database of Phylogeny and ALIgnment of homologous protein structures.

Authors:  S Balaji; S Sujatha; S S Kumar; N Srinivasan
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.

Authors:  P Dosset; J C Hus; D Marion; M Blackledge
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

3.  Protein sequence entropy is closely related to packing density and hydrophobicity.

Authors:  H Liao; W Yeh; D Chiang; R L Jernigan; B Lustig
Journal:  Protein Eng Des Sel       Date:  2005-03-23       Impact factor: 1.650

4.  Packing regularities in biological structures relate to their dynamics.

Authors:  Robert L Jernigan; Andrzej Kloczkowski
Journal:  Methods Mol Biol       Date:  2007

5.  Basis for substrate recognition and distinction by matrix metalloproteinases.

Authors:  Boris I Ratnikov; Piotr Cieplak; Kosi Gramatikoff; James Pierce; Alexey Eroshkin; Yoshinobu Igarashi; Marat Kazanov; Qing Sun; Adam Godzik; Andrei Osterman; Boguslaw Stec; Alex Strongin; Jeffrey W Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

6.  Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis.

Authors:  Sazzad Karim; Dan Lundh; Kjell-Ove Holmström; Abul Mandal; Minna Pirhonen
Journal:  J Mol Model       Date:  2005-05-12       Impact factor: 1.810

7.  A model of dynamic side-chain--side-chain interactions in the alpha-lactalbumin molten globule.

Authors:  P Bai; J Song; L Luo; Z Y Peng
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

8.  Functional prediction of a T-DNA tagged gene of Arabidopsis thaliana by in silico analysis.

Authors:  Maria Svensson; Dan Lundh; Mikael Ejdebäck; Abul Mandal
Journal:  J Mol Model       Date:  2004-02-07       Impact factor: 1.810

9.  Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria.

Authors:  Rita Casadio; Piero Fariselli; Giacomo Finocchiaro; Pier Luigi Martelli
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

10.  Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools.

Authors:  Daisuke Kihara; Yifeng David Yang; Troy Hawkins
Journal:  Cancer Inform       Date:  2007-02-07
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.