Literature DB >> 10849359

The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes.

Y Yukawa1, M Sugita, N Choisne, I Small, M Sugiura.   

Abstract

The effect of alteration of 5' and 3' flanking sequences on the transcription of plant tRNA genes was analysed using an RNA polymerase III-dependent in vitro transcription system derived from nuclei of cultured tobacco cells. A TATA-like sequence and the CAA motif frequently observed upstream of plant tRNA genes, and the poly(T) stretch usually present downstream, were shown to be necessary for efficient re-initiation of transcription. The CAA motif was shown to be a transcription initiation site. Introduction of the CAA and TATA-like motifs into a gene naturally lacking them greatly enhanced transcription by promoting efficient re-initiation.

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Year:  2000        PMID: 10849359     DOI: 10.1046/j.1365-313x.2000.00752.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  16 in total

1.  Plant dicistronic tRNA-snoRNA genes: a new mode of expression of the small nucleolar RNAs processed by RNase Z.

Authors:  Katarzyna Kruszka; Fredy Barneche; Romain Guyot; Jérôme Ailhas; Isabelle Meneau; Steffen Schiffer; Anita Marchfelder; Manuel Echeverría
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

2.  Molecular organization of the 5S rDNA gene type II in elasmobranchs.

Authors:  Sergio I Castro; Jose S Hleap; Heiber Cárdenas; Christian Blouin
Journal:  RNA Biol       Date:  2015-10-21       Impact factor: 4.652

3.  Low abundant spacer 5S rRNA transcripts are frequently polyadenylated in Nicotiana.

Authors:  Jaroslav Fulnecek; Ales Kovarik
Journal:  Mol Genet Genomics       Date:  2007-08-02       Impact factor: 3.291

4.  Visualizing bz1 missense suppression in Zea mays: an assay for monocot tRNA expression and utilization.

Authors:  Xing Rong Wu; Zhihong Chen; Anuradha Shende; Hugo K Dooner; William R Folk
Journal:  Plant Mol Biol       Date:  2006-07       Impact factor: 4.076

5.  Widespread use of TATA elements in the core promoters for RNA polymerases III, II, and I in fission yeast.

Authors:  M Hamada; Y Huang; T M Lowe; R J Maraia
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

Review 6.  A methods review on use of nonsense suppression to study 3' end formation and other aspects of tRNA biogenesis.

Authors:  Keshab Rijal; Richard J Maraia; Aneeshkumar G Arimbasseri
Journal:  Gene       Date:  2014-11-18       Impact factor: 3.688

7.  Plant 7SL RNA and tRNA(Tyr) genes with inserted antisense sequences are efficiently expressed in an in vitro transcription system from Nicotiana tabacum cells.

Authors:  Yasushi Yukawa; Jaroslav Matousek; Michael Grimm; Lukas Vrba; Gerhard Steger; Masahiro Sugiura; Hildburg Beier
Journal:  Plant Mol Biol       Date:  2002-11       Impact factor: 4.076

8.  Analysis of the 5S RNA pool in Arabidopsis thaliana: RNAs are heterogeneous and only two of the genomic 5S loci produce mature 5S RNA.

Authors:  Catherine Cloix; Sylvie Tutois; Yasushi Yukawa; Olivier Mathieu; Claudine Cuvillier; Marie-Claude Espagnol; Georges Picard; Sylvette Tourmente
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

9.  Processing of a dicistronic tRNA-snoRNA precursor: combined analysis in vitro and in vivo reveals alternate pathways and coupling to assembly of snoRNP.

Authors:  Nicolas Barbezier; Giusy Canino; Julie Rodor; Edouard Jobet; Julio Saez-Vasquez; Anita Marchfelder; Manuel Echeverría
Journal:  Plant Physiol       Date:  2009-05-06       Impact factor: 8.340

10.  Sugar modulation of anaerobic-response networks in maize root tips.

Authors:  Maria-Angelica Sanclemente; Fangfang Ma; Peng Liu; Adriana Della Porta; Jugpreet Singh; Shan Wu; Thomas Colquhoun; Timothy Johnson; Jiahn-Chou Guan; Karen E Koch
Journal:  Plant Physiol       Date:  2021-03-15       Impact factor: 8.340

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