Literature DB >> 10829297

Modeling RNA tertiary structure from patterns of sequence variation.

F Michel1, M Costa, C Massire, E Westhof.   

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Year:  2000        PMID: 10829297     DOI: 10.1016/s0076-6879(00)17031-4

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  13 in total

Review 1.  Predicting and modeling RNA architecture.

Authors:  Eric Westhof; Benoît Masquida; Fabrice Jossinet
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

2.  Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?

Authors:  Jiří Šponer; Judit E Šponer; Anton I Petrov; Neocles B Leontis
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

3.  Tertiary architecture of the Oceanobacillus iheyensis group II intron.

Authors:  Navtej Toor; Kevin S Keating; Olga Fedorova; Kanagalaghatta Rajashankar; Jimin Wang; Anna Marie Pyle
Journal:  RNA       Date:  2009-12-01       Impact factor: 4.942

Review 4.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

5.  Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity.

Authors:  Zhe Zhang; Peng Xiong; Tongchuan Zhang; Junfeng Wang; Jian Zhan; Yaoqi Zhou
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

6.  A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs.

Authors:  Elena Rivas; Jody Clements; Sean R Eddy
Journal:  Nat Methods       Date:  2016-11-07       Impact factor: 28.547

Review 7.  Evolutionary conservation of RNA sequence and structure.

Authors:  Elena Rivas
Journal:  Wiley Interdiscip Rev RNA       Date:  2021-03-22       Impact factor: 9.349

8.  Comprehensive survey and geometric classification of base triples in RNA structures.

Authors:  Amal S Abu Almakarem; Anton I Petrov; Jesse Stombaugh; Craig L Zirbel; Neocles B Leontis
Journal:  Nucleic Acids Res       Date:  2011-11-03       Impact factor: 16.971

9.  MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.

Authors:  Julie D Thompson; Stephen R Holbrook; Kazutaka Katoh; Patrice Koehl; Dino Moras; Eric Westhof; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2005-07-25       Impact factor: 16.971

10.  R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.

Authors:  Ryan R Rahrig; Anton I Petrov; Neocles B Leontis; Craig L Zirbel
Journal:  Nucleic Acids Res       Date:  2013-05-28       Impact factor: 16.971

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