Literature DB >> 10829279

Purification, crystallization, and X-ray diffraction analysis of small ribozymes.

J E Wedekind1, D B McKay.   

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Year:  2000        PMID： 10829279     DOI： 10.1016/s0076-6879(00)17013-2

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  21 in total

1.  Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization.

Authors:  L D Sherlin; T L Bullock; T A Nissan; J J Perona; F J Lariviere; O C Uhlenbeck; S A Scaringe
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

2.  Optimization and optimality of a short ribozyme ligase that joins non-Watson-Crick base pairings.

Authors:  M P Robertson; J R Hesselberth; A D Ellington
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

3.  Crystallographic analysis of small ribozymes and riboswitches.

Authors:  Geoffrey M Lippa; Joseph A Liberman; Jermaine L Jenkins; Jolanta Krucinska; Mohammad Salim; Joseph E Wedekind
Journal:  Methods Mol Biol       Date:  2012

4.  Crystallization and X-ray diffraction analysis of the Trp/amber editing site of hepatitis delta virus (+)RNA: a case of rational design.

Authors:  Celeste MacElrevey; Joseph E Wedekind
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-12

5.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

6.  A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Authors:  Andrew T Torelli; Jolanta Krucinska; Joseph E Wedekind
Journal:  RNA       Date:  2007-05-08       Impact factor: 4.942

7.  The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain.

Authors:  Robert C Spitale; Andrew T Torelli; Jolanta Krucinska; Vahe Bandarian; Joseph E Wedekind
Journal:  J Biol Chem       Date:  2009-03-04       Impact factor: 5.157

8.  Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer.

Authors:  Jason Salter; Jolanta Krucinska; Shabnam Alam; Valerie Grum-Tokars; Joseph E Wedekind
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

9.  Single-atom imino substitutions at A9 and A10 reveal distinct effects on the fold and function of the hairpin ribozyme catalytic core.

Authors:  Robert C Spitale; Rosaria Volpini; Michael V Mungillo; Jolanta Krucinska; Gloria Cristalli; Joseph E Wedekind
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

10.  Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics.

Authors:  Joseph A Liberman; Krishna C Suddala; Asaminew Aytenfisu; Dalen Chan; Ivan A Belashov; Mohammad Salim; David H Mathews; Robert C Spitale; Nils G Walter; Joseph E Wedekind
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-23       Impact factor: 11.205
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