Literature DB >> 10821847

Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls.

S Y Seah1, G Labbé, S Nerdinger, M R Johnson, V Snieckus, L D Eltis.   

Abstract

The ability of 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate (HOPDA) hydrolase (BphD) of Burkholderia cepacia LB400 to hydrolyze polychlorinated biphenyl (PCB) metabolites was assessed by determining its specificity for monochlorinated HOPDAs. The relative specificities of BphD for HOPDAs bearing chlorine substituents on the phenyl moiety were 0.28, 0.38, and 1.1 for 8-Cl, 9-Cl, and 10-Cl HOPDA, respectively, versus HOPDA (100 mm phosphate, pH 7.5, 25 degrees C). In contrast, HOPDAs bearing chlorine substituents on the dienoate moiety were poor substrates for BphD, which hydrolyzed 3-Cl, 4-Cl, and 5-Cl HOPDA at relative maximal rates of 2.1 x 10(-3), 1.4 x 10(-4), and 0.36, respectively, versus HOPDA. The enzymatic transformation of 3-, 5-, 8-, 9-, and 10-Cl HOPDAs yielded stoichiometric quantities of the corresponding benzoate, indicating that BphD catalyzes the hydrolysis of these HOPDAs in the same manner as unchlorinated HOPDA. HOPDAs also underwent a nonenzymatic transformation to products that included acetophenone. In the case of 4-Cl HOPDA, this transformation proceeded via the formation of 4-OH HOPDA (t(12) = 2.8 h; 100 mm phosphate, pH 7.5, 25 degrees C). 3-Cl HOPDA (t(12) = 504 h) was almost 3 times more stable than 4-OH HOPDA. Finally, 3-Cl, 4-Cl and 4-OH HOPDAs competitively inhibited the BphD-catalyzed hydrolysis of HOPDA (K(ic) values of 0.57 +/- 0. 04, 3.6 +/- 0.2, and 0.95 +/- 0.04 microm, respectively). These results explain the accumulation of HOPDAs and chloroacetophenones in the microbial degradation of certain PCB congeners. More significantly, they indicate that in the degradation of PCB mixtures, BphD would be inhibited, thereby slowing the mineralization of all congeners. BphD is thus a key determinant in the aerobic microbial degradation of PCBs.

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Year:  2000        PMID: 10821847     DOI: 10.1074/jbc.275.21.15701

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

Review 1.  Biodegradation, biotransformation, and biocatalysis (b3).

Authors:  R E Parales; N C Bruce; A Schmid; L P Wackett
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

2.  Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Authors:  V J Denef; J Park; T V Tsoi; J-M Rouillard; H Zhang; J A Wibbenmeyer; W Verstraete; E Gulari; S A Hashsham; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

3.  Characterization of biphenyl dioxygenase sequences and activities encoded by the metagenomes of highly polychlorobiphenyl-contaminated soils.

Authors:  Christine Standfuss-Gabisch; Djamila Al-Halbouni; Bernd Hofer
Journal:  Appl Environ Microbiol       Date:  2012-02-10       Impact factor: 4.792

4.  Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.

Authors:  V J Denef; M A Patrauchan; C Florizone; J Park; T V Tsoi; W Verstraete; J M Tiedje; L D Eltis
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

5.  Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features.

Authors:  H Habe; J S Chung; J H Lee; K Kasuga; T Yoshida; H Nojiri; T Omori
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

6.  Comparative specificities of two evolutionarily divergent hydrolases involved in microbial degradation of polychlorinated biphenyls.

Authors:  S Y Seah; G Labbé; S R Kaschabek; F Reifenrath; W Reineke; L D Eltis
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

7.  Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway.

Authors:  Geoff P Horsman; Jiyuan Ke; Shaodong Dai; Stephen Y K Seah; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Biochemistry       Date:  2006-09-19       Impact factor: 3.162

8.  Catalytic Promiscuity of Ancestral Esterases and Hydroxynitrile Lyases.

Authors:  Titu Devamani; Alissa M Rauwerdink; Mark Lunzer; Bryan J Jones; Joanna L Mooney; Maxilmilien Alaric O Tan; Zhi-Jun Zhang; Jian-He Xu; Antony M Dean; Romas J Kazlauskas
Journal:  J Am Chem Soc       Date:  2016-01-15       Impact factor: 15.419

9.  Flow cytometry analysis of changes in the DNA content of the polychlorinated biphenyl degrader Comamonas testosteroni TK102: effect of metabolites on cell-cell separation.

Authors:  Yoshinori Hiraoka; Tohru Yamada; Keiko Tone; Yutaka Futaesaku; Kazuhide Kimbara
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

10.  The lid domain of the MCP hydrolase DxnB2 contributes to the reactivity toward recalcitrant PCB metabolites.

Authors:  Antonio C Ruzzini; Shiva Bhowmik; Katherine C Yam; Subhangi Ghosh; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Biochemistry       Date:  2013-08-09       Impact factor: 3.162

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