Literature DB >> 10815695

Collection of buccal cell DNA using treated cards.

L C Harty1, M Garcia-Closas, N Rothman, Y A Reid, M A Tucker, P Hartge.   

Abstract

We devised a simple, noninvasive, cost-efficient technique for collecting buccal cell DNA for molecular epidemiology studies. Subjects (n = 52) brushed their oral mucosa and expectorated the fluid in their mouths, which was applied to "Guthrie" cards pretreated to retard bacterial growth and inhibit nuclease activity (IsoCode, Schleicher and Schuell, Keene, NH). The cards are well-suited for transport and storage because they dry quickly, need no processing, and are compact and lightweight. We stored the samples at room temperature for 5 days to mimic a field situation and then divided them into portions from which DNA was extracted either immediately or after storage for 9 months at room temperature, -20 degrees C, or -70 degrees C. The fresh samples had a median yield of 2.3 microg of human DNA (range, 0.2-53.8 microg), which was adequate for at least 550 PCR reactions. More than 90% of the samples were amplified in all three beta-globin gene fragment assays attempted. DNA extract frozen for 1 week at -20 degrees C also performed well. Stored samples had reduced DNA yields, which achieved statistical significance for room temperature and -70 degrees C, but not -20 degrees C, storage. However, because all of the stored samples tested were successfully amplified, the observed reduction may represent tighter DNA fixation to the card over time rather than loss of genetic material. We conclude that treated cards are an alternative to brushes/swabs and mouth rinses for the collection of buccal cell DNA and offer some advantages over these methods, particularly for large-scale or large-scale or long-term studies involving stored samples and studies in which samples are collected off-site and transported. Future studies that enable direct comparisons of the various buccal cell collection methods are needed.

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Year:  2000        PMID: 10815695

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  20 in total

1.  New saliva DNA collection method compared to buccal cell collection techniques for epidemiological studies.

Authors:  Nikki L Rogers; Shelley A Cole; Hao-Chang Lan; Aldo Crossa; Ellen W Demerath
Journal:  Am J Hum Biol       Date:  2007 May-Jun       Impact factor: 1.937

2.  A simple method of genomic DNA extraction from human samples for PCR-RFLP analysis.

Authors:  Souvik Ghatak; Rajendra Bose Muthukumaran; Senthil Kumar Nachimuthu
Journal:  J Biomol Tech       Date:  2013-12

3.  [A non-invasive method for detecting mitochondrial tRNAThr15927G>A mutation].

Authors:  Zhining Tang; Xiaowen Tang; Ling Xue; Minxin Guan
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2021-01-30

4.  Comparative analysis of three methods from dried blood spots for expeditious DNA extraction from mosquitoes; suitable for PCR based techniques.

Authors:  Barsa Baisalini Panda; Nitika Pradhan; Rupenangshu K Hazra
Journal:  Mol Biol Rep       Date:  2018-11-16       Impact factor: 2.316

5.  Evaluation of quality of DNA extracted from buccal swabs for microarray based genotyping.

Authors:  Alex Livy; Sayhean Lye; Chahil K Jagdish; Nurul Hanis; Velapasamy Sharmila; Lian Wee Ler; Bagali Pramod
Journal:  Indian J Clin Biochem       Date:  2011-08-23

6.  Design of a protocol for obtaining genomic DNA from saliva using mouthwash: Samples taken from patients with periodontal disease.

Authors:  Ángel Chávez Mendoza; Beatriz Buentello Volante; María Esther Ocharán Hernández; Claudia Camelia Calzada Mendoza; Arturo Flores Pliego; Héctor A Baptista Gonzalez; Higinio Estrada Juárez
Journal:  J Oral Biol Craniofac Res       Date:  2016-02-11

7.  Comparative analysis of the Schleicher and Schuell IsoCode Stix DNA isolation device and the Qiagen QIAamp DNA Mini Kit.

Authors:  Susan R Coyne; Philip D Craw; David A Norwood; Melanie P Ulrich
Journal:  J Clin Microbiol       Date:  2004-10       Impact factor: 5.948

8.  Unbiased whole-genome amplification directly from clinical samples.

Authors:  Seiyu Hosono; A Fawad Faruqi; Frank B Dean; Yuefen Du; Zhenyu Sun; Xiaohong Wu; Jing Du; Stephen F Kingsmore; Michael Egholm; Roger S Lasken
Journal:  Genome Res       Date:  2003-04-14       Impact factor: 9.043

9.  Assessment of DNA extracted from FTA cards for use on the Illumina iSelect BeadChip.

Authors:  Matthew C McClure; Stephanie D McKay; Robert D Schnabel; Jeremy F Taylor
Journal:  BMC Res Notes       Date:  2009-06-16

10.  Quality of DNA extracted from mouthwashes.

Authors:  Tetyana Zayats; Terri L Young; David A Mackey; François Malecaze; Patrick Calvas; Jeremy A Guggenheim
Journal:  PLoS One       Date:  2009-07-07       Impact factor: 3.240

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