Literature DB >> 10814592

Reverse transcription of an RNA genome from databasing paper (FTA(R)).

C D Rogers1, L A Burgoyne.   

Abstract

The instability of RNA in solutions during storage and travel is an impediment to its utilization in routine diagnostics. A robust and simple approach to the problem of RNA protection and processing is offered by storage of RNA desiccated with processing procedures that do not solublize the RNA until the beginning of reverse transcription. The feasibility of this general approach was tested with coxsackievirus B4 (CVB-4) from blood or culture fluid held on a storage and transport medium (FTA(R)) and analysed by reverse transcriptase PCR (RT-PCR) without removing the RNA from the FTA(R) until reverse transcription. Phase-trapping techniques based on water-miscible solvents such as ethanol or phenol were compared with simple buffers and concentrated lithium chloride solutions. RT-PCR detection of viral RNA reached a sensitivity of approximately 0.1 fg, which is comparable with other non-nested PCR techniques. Whole blood as a virus vehicle significantly interfered with CVB-4 detection, but to an acceptable degree. Desiccation-storage of the RNA of CVB-4 appears to be unaffected by weeks on the storage medium under ambient conditions. These characteristics indicate that this approach forms a credible developmental base for RNA-based pathogen diagnostics with particular application to the problem of transporting potentially infectious body fluids to a centralized laboratory for analysis.

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Year:  2000        PMID: 10814592     DOI: 10.1042/ba19990113

Source DB:  PubMed          Journal:  Biotechnol Appl Biochem        ISSN: 0885-4513            Impact factor:   2.431


  11 in total

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Journal:  BMJ       Date:  2006-01-06

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Authors:  Tolunay Beker Aydemir; Raymond K Blanchard; Robert J Cousins
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Journal:  J Clin Microbiol       Date:  2004-12       Impact factor: 5.948

4.  Use of dried serum spots for serological and molecular detection of hepatitis a virus.

Authors:  Delphine Desbois; Anne-Marie Roque-Afonso; Patricia Lebraud; Elisabeth Dussaix
Journal:  J Clin Microbiol       Date:  2009-03-25       Impact factor: 5.948

5.  Exfoliated cells in stool: a source for reverse transcription-PCR-based analysis of biomarkers of gastrointestinal cancer.

Authors:  Ying Jie Yu; Adhip P N Majumdar; Jordan M Nechvatal; Jeffrey L Ram; Marc D Basson; Lance K Heilbrun; Ikuko Kato
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2008-02       Impact factor: 4.254

6.  Filter paper collection of Plasmodium falciparum mRNA for detecting low-density gametocytes.

Authors:  Sophie Jones; Colin J Sutherland; Cornelus Hermsen; Theo Arens; Karina Teelen; Rachel Hallett; Patrick Corran; Marga van der Vegte-Bolmer; Robert Sauerwein; Chris J Drakeley; Teun Bousema
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7.  Leapfrog diagnostics: Demonstration of a broad spectrum pathogen identification platform in a resource-limited setting.

Authors:  Tomasz A Leski; Rashid Ansumana; Anthony P Malanoski; David H Jimmy; Umaru Bangura; Brian R Barrows; Morie Alpha; Bashiru M Koroma; Nina C Long; Abu J Sundufu; Alfred S Bockarie; Baochuan Lin; David A Stenger
Journal:  Health Res Policy Syst       Date:  2012-07-04

8.  Avian influenza surveillance with FTA cards: field methods, biosafety, and transportation issues solved.

Authors:  Robert H S Kraus; Pim van Hooft; Jonas Waldenström; Neus Latorre-Margalef; Ronald C Ydenberg; Herbert H T Prins
Journal:  J Vis Exp       Date:  2011-08-02       Impact factor: 1.355

9.  Utility of filter paper for preserving insects, bacteria, and host reservoir DNA for molecular testing.

Authors:  F Karimian; Mm Sedaghat; Ma Oshaghi; F Mohtarami; A Sanei Dehkordi; M Koosha; S Akbari; Ss Hashemi-Aghdam
Journal:  Iran J Arthropod Borne Dis       Date:  2011-12-31

10.  Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper.

Authors:  L M Smith; L A Burgoyne
Journal:  BMC Ecol       Date:  2004-04-08       Impact factor: 2.964

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