Literature DB >> 10811904

Femtosecond linear dichroism of DNA-intercalating chromophores: solvation and charge separation dynamics of [Ru(phen)2dppz]2+ systems.

B Onfelt1, P Lincoln, B Nordén, J S Baskin, A H Zewail.   

Abstract

The DNA-intercalating chromophore [Ru(phen)(2)dppz](2+) has unique photophysical properties, the most striking of which is the "light-switch" characteristic when binding to DNA. As a dimer, it acts as a molecular staple for DNA, exhibiting a remarkable double-intercalating topology. Herein, we report femtosecond dynamics of the monomeric and the covalently linked dimeric chromophores, both free in aqueous solution and complexed with DNA. Transient absorption and linear dichroism show the electronic relaxation to the lowest metal-to-ligand charge-transfer (CT) state, and subpicosecond kinetics have been observed for this chromophore for what is, to our knowledge, the first time. We observe two distinct relaxation processes in aqueous solution with time constants of 700 fs and 4 ps. Interestingly, these two time constants are very similar to those observed for the reorientational modes of bulk water. The 700-fs process involves a major dichroism change. We relate these observations to the change in charge distribution and to the time scales involved in solvation of the CT state. Slower processes, with lifetimes of approximately 7 and 37 ps, were observed for both monomer and dimer when bound to DNA. Such a difference can be ascribed to the change of the structural and electronic relaxation experienced in the DNA intercalation pocket. Finally, the recombination lifetime of the final metal-to-ligand CT state to the ground state, which is a key in the light-switch process, is found in aqueous solution to be sensitive to structural modification, ranging from 260 ps for [Ru(phen)(2)dppz](2+) and 360 ps for the monomer chromophore derivative to 2.0 ns for the dimer. This large change reflects the direct role of solvation in the light-switch process.

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Year:  2000        PMID: 10811904      PMCID: PMC18497          DOI: 10.1073/pnas.100127397

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  5 in total

1.  Electroabsorption Studies of Metal-to-Ligand Charge Transfer in Ru(phenanthroline)(3)(2+): Evidence for Intrinsic Charge Localization in the Initially Formed Excited State.

Authors:  Laba Karki; Joseph T. Hupp
Journal:  Inorg Chem       Date:  1997-07-16       Impact factor: 5.165

2.  Femtosecond Dynamics of Excited-State Evolution in

Authors: 
Journal:  Science       Date:  1997-01-03       Impact factor: 47.728

3.  Ru(phen)(2)dppz(2+) Luminescence: Dependence on DNA Sequences and Groove-Binding Agents.

Authors:  R. Erik Holmlin; Eric D. A. Stemp; Jacqueline K. Barton
Journal:  Inorg Chem       Date:  1998-01-12       Impact factor: 5.165

4.  Femtosecond dynamics of the DNA intercalator ethidium and electron transfer with mononucleotides in water.

Authors:  T Fiebig; C Wan; S O Kelley; J K Barton; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

5.  Characterization of dipyridophenazine complexes of ruthenium(II): the light switch effect as a function of nucleic acid sequence and conformation.

Authors:  Y Jenkins; A E Friedman; N J Turro; J K Barton
Journal:  Biochemistry       Date:  1992-11-10       Impact factor: 3.162

  5 in total
  6 in total

1.  Biophysical studies of a ruthenium(II) polypyridyl complex binding to DNA and RNA prove that nucleic acid structure has significant effects on binding behaviors.

Authors:  Hong Xu; Yi Liang; Peng Zhang; Fen Du; Bing-Rui Zhou; Jun Wu; Jian-Hong Liu; Zhi-Gang Liu; Liang-Nian Ji
Journal:  J Biol Inorg Chem       Date:  2005-09-23       Impact factor: 3.358

2.  Sensitivity of Ru(bpy)2dppz2+ luminescence to DNA defects.

Authors:  Mi Hee Lim; Hang Song; Eric D Olmon; Elizabeth E Dervan; Jacqueline K Barton
Journal:  Inorg Chem       Date:  2009-06-15       Impact factor: 5.165

3.  Solvation-driven charge transfer and localization in metal complexes.

Authors:  Ariana Rondi; Yuseff Rodriguez; Thomas Feurer; Andrea Cannizzo
Journal:  Acc Chem Res       Date:  2015-04-22       Impact factor: 22.384

4.  Photochemically active DNA-intercalating ruthenium and related complexes - insights by combining crystallography and transient spectroscopy.

Authors:  Christine J Cardin; John M Kelly; Susan J Quinn
Journal:  Chem Sci       Date:  2017-04-12       Impact factor: 9.825

5.  Chiral Plasmonic Fields Probe Structural Order of Biointerfaces.

Authors:  Christopher Kelly; Ryan Tullius; Adrian J Lapthorn; Nikolaj Gadegaard; Graeme Cooke; Laurence D Barron; Affar S Karimullah; Vincent M Rotello; Malcolm Kadodwala
Journal:  J Am Chem Soc       Date:  2018-06-29       Impact factor: 15.419

6.  Direct observation by time-resolved infrared spectroscopy of the bright and the dark excited states of the [Ru(phen)2(dppz)]2+ light-switch compound in solution and when bound to DNA.

Authors:  Fergus E Poynton; James P Hall; Páraic M Keane; Christine Schwarz; Igor V Sazanovich; Michael Towrie; Thorfinnur Gunnlaugsson; Christine J Cardin; David J Cardin; Susan J Quinn; Conor Long; John M Kelly
Journal:  Chem Sci       Date:  2016-01-27       Impact factor: 9.825

  6 in total

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