Coincidence of the molecular organization of beta-substituted oligothiophenes in two-dimensional layers and three-dimensional crystals

The molecular arrangements of three different alkyl-substituted oligothiophenes both in two-dimensional adsorbed layers at a substrate interface and in bulk three-dimensional crystals were studied. Scanning tunneling microscopy (STM) was used to investigate the ordering of the conjugated oligomers in two-dimensional layers adsorbed on graphite. These data were compared with the X-ray structure determinations of single crystals revealing the arrangement in the three-dimensional bulk material. Quaterthiophenes 1 and 2, bearing dodecyl and hexyl side chains, respectively, exhibit a lamella-type stacking of the conjugated backbone concomitant with an interlocking of the alkyl side chains both on the surface and in the crystal. In contrast, the arrangement of propyl-substituted quaterthiophene 3 is rather "herringbone-like" due to the reduced interactions of the shorter alkyl side chains. In all three cases, evidently, the two-dimensional ordering at the graphite surface is coincident with the molecular packing in one cross-section of the three-dimensional crystal.