Literature DB >> 10798360

Illegitimate splicing of the NF1 gene in healthy individuals mimics mutation-induced splicing alterations in NF1 patients.

K Wimmer1, M Eckart, H Rehder, C Fonatsch.   

Abstract

Neurofibromatosis type 1 (NF1) is a common inherited disease affecting one in 3,500 individuals. The mutation rate in the NF1 gene is one of the highest known for human genes. Compared to other methods, the protein truncation test (PTT) and subsequent sequence analysis of cloned cDNA provides improved efficiency in detecting NF1 mutations that are dispersed throughout the gene spanning 350 kb of genomic DNA. Sequencing of cDNA of patients affected with NF1 mutations revealed multiple splicing errors. Since similar missplicings were also found in "aged" blood of healthy individuals, they are most likely attributable to a general decrease in splice site selection in aged blood. We show that restoring viability of lymphocytes before RNA extraction by cultivation and PHA stimulation diminishes aberrant splicing in aged blood and is thus useful to circumvent splicing alterations which are frequently compromising mutation detection in patient samples and mimic mutation-induced alterations of mRNA.

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Year:  2000        PMID: 10798360     DOI: 10.1007/s004390051043

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  14 in total

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4.  Functional analysis of splicing mutations in exon 7 of NF1 gene.

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Review 5.  Towards a neurobiological understanding of pain in neurofibromatosis type 1: mechanisms and implications for treatment.

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6.  NF1 exon 7 skipping and sequence alterations in exonic splice enhancers (ESEs) in a neurofibromatosis 1 patient.

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Journal:  Hum Genet       Date:  2003-09-06       Impact factor: 4.132

7.  PTEN transcript variants caused by illegitimate splicing in "aged" blood samples and EBV-transformed cell lines.

Authors:  Yunying Liu; Priyangi Malaviarachchi; Marjorie Beggs; Peter D Emanuel
Journal:  Hum Genet       Date:  2010-09-14       Impact factor: 4.132

8.  Transcriptional and translational effects of intronic CAPN3 gene mutations.

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Journal:  Hum Mutat       Date:  2010-09       Impact factor: 4.878

9.  The NF1 gene contains hotspots for L1 endonuclease-dependent de novo insertion.

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10.  Cyclic stretch increases splicing noise rate in cultured human fibroblasts.

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Journal:  BMC Res Notes       Date:  2011-10-31
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