Literature DB >> 10793691

A simplified method for study of RNA conformation--reaction of formylmethionine transfer RNA with [14C]methylamine-bisulfite.

L H Schulman, R Shapiro, D C Law, J B Louis.   

Abstract

A new chemical method for radioactive labeling of single-stranded regions of RNA has been used to probe the three-dimensional structure of E. coli tRNA(fMet) in solution. The procedure involves conversion of cytosine residues to N(4)-[(14)C]methylcytosines by treatment with (14)CH(3)NH(2) and sodium bisulfite at pH7. Ribonuclease digestion of the modified tRNA produces (14)C-labeled oligonucleotides which comigrate with the corresponding unlabeled oligonucleotides, facilitating structural analysis. By this procedure, E. coli tRNA(fMet) has been found to contain only six reactive cytosines: C(1), C(16), C(17), C(35), C(75) and C(76). In addition, slow reaction at C(m) (33) was observed. These results are in excellent agreement with previously reported data on the sites of exposed cytosine residues in tRNA(fMet) obtained by two other chemical methods. The methylamine-bisulfite procedure is recommended for studying the ordered structure of more complex polyribonucleotides such as viral and ribosomal RNAs.

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Year:  1974        PMID: 10793691      PMCID: PMC344352          DOI: 10.1093/nar/1.10.1305

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Conversion of 4-thiouridine residues in tRNA into radioactive N-4-methylcytidine for sequence analysis.

Authors:  K Burton
Journal:  FEBS Lett       Date:  1970-01-26       Impact factor: 4.124

2.  Selective modification of cytidine and uridine residues in Escherichia coli formylmethionine transfer ribonucleic acid.

Authors:  S E Chang
Journal:  J Mol Biol       Date:  1973-04-15       Impact factor: 5.469

3.  Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.

Authors:  W Min Jou; G Haegeman; M Ysebaert; W Fiers
Journal:  Nature       Date:  1972-05-12       Impact factor: 49.962

4.  A new chemical probe for single-stranded RNA.

Authors:  R Shapiro; D C Law; J M Weisgras
Journal:  Biochem Biophys Res Commun       Date:  1972-10-17       Impact factor: 3.575

5.  Conversion of exposed cytidine residues to uridine residues in Escherichia coli formylmethionine transfer ribonucleic acid.

Authors:  J P Goddard; L H Schulman
Journal:  J Biol Chem       Date:  1972-06-25       Impact factor: 5.157

6.  Bisulfite-catalyzed transamination of cytosine and cytidine.

Authors:  R Shapiro; J M Weisgras
Journal:  Biochem Biophys Res Commun       Date:  1970-08-24       Impact factor: 3.575

7.  Chemical transformation of 4-thiouracil nucleosides to uracil and cytosine counterparts.

Authors:  E B Ziff; J R Fresco
Journal:  J Am Chem Soc       Date:  1968-12-18       Impact factor: 15.419

8.  Permanganate oxidation of 4-thiouracil derivatives. Isolation and properties of 1-substituted-2-pyrimidone-4-sulfonates.

Authors:  H Hayatsu; M Yano
Journal:  Tetrahedron Lett       Date:  1969-02       Impact factor: 2.415

9.  Transfer RNA, I. Isolation and characterization of a new yeast alanine transfer RNA.

Authors:  R H Reeves; N Imura; H Schwam; G B Weiss; L H Schulman; R W Chambers
Journal:  Proc Natl Acad Sci U S A       Date:  1968-08       Impact factor: 11.205

10.  The oxygen-mediated reaction between 4-thiouracil derivatives and bi- sulfite. Isolation and characterization of 1-methyluracil 4-thiosulfate as an intermediate in the formation of 1-methyluracil-4-sulfonate.

Authors:  H Hayatsu; M Inoue
Journal:  J Am Chem Soc       Date:  1971-05-05       Impact factor: 15.419

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  3 in total

1.  The cleavage of transfer RNA by a single strang specific endonuclease from Neurospora crassa.

Authors:  J Tal
Journal:  Nucleic Acids Res       Date:  1975-07       Impact factor: 16.971

2.  Attachment of protein affinity-labeling reagents of variable length and amino acid specificity to E. coli tRNAfMet.

Authors:  L H Schulman; H Pelka; S A Reines
Journal:  Nucleic Acids Res       Date:  1981-03-11       Impact factor: 16.971

3.  A rapid cytosine-specific modification of E. coli tRNA Leu 1 by semicarbazide-bisulfite, a probe for polynucleotide conformations.

Authors:  K Negishi; F Harada; S Nishimura; H Hayatsu
Journal:  Nucleic Acids Res       Date:  1977-07       Impact factor: 16.971

  3 in total

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