Literature DB >> 10793665

Thermodynamic and kinetic properties of short RNA helices: the oligomer sequence AnGCUn.

J Ravetch, J Gralla, D M Crothers.   

Abstract

We studied the thermodynamic, kinetic and optical properties of the double helices formed by the series of self-complementary oligonucleotides, (AP)(n)GpC(pU)(n), 2 </= n </= 4, and found that the shortest helix, containing just 6 base pairs, is less stable than would be predicted from the properties of the larger molecules. It also shows a markedly smaller hyperchromism on melting than expected. These anomalous properties of a short helix indicate that one cannot always assume that base pair free energies and extinction coefficient changes are independent of helix size.

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Year:  1974        PMID: 10793665      PMCID: PMC343329          DOI: 10.1093/nar/1.1.109

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  The conformational transitions in yeast tRNAPhe as studied with tRNAPhe fragments.

Authors:  D Riesner; G Maass; R Thiebe; P Philippsen; H G Zachau
Journal:  Eur J Biochem       Date:  1973-07-02

2.  Stability of RNA hairpin loops: A 6 -C m -U 6 .

Authors:  O C Uhlenbeck; P N Borer; B Dengler; I Tinoco
Journal:  J Mol Biol       Date:  1973-02-05       Impact factor: 5.469

3.  Free energy of imperfect nucleic acid helices. II. Small hairpin loops.

Authors:  J Gralla; D M Crothers
Journal:  J Mol Biol       Date:  1973-02-05       Impact factor: 5.469

4.  Estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; O C Uhlenbeck; M D Levine
Journal:  Nature       Date:  1971-04-09       Impact factor: 49.962

5.  Relaxation kinetics of dimer formation by self complementary oligonucleotides.

Authors:  M E Craig; D M Crothers; P Doty
Journal:  J Mol Biol       Date:  1971-12-14       Impact factor: 5.469

6.  Helix formation by d(TA) oligomers. II. Analysis of the helix-coli transitions of linear and circular oligomers.

Authors:  I E Scheffler; E L Elson; R L Baldwin
Journal:  J Mol Biol       Date:  1970-02-28       Impact factor: 5.469

7.  Thermodynamics and kinetics of G-C base pairing in the isolated extra arm of serine-specific transfer RNA from yeast.

Authors:  S M Coutts
Journal:  Biochim Biophys Acta       Date:  1971-02-25

8.  Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs.

Authors:  O C Uhlenbeck; F H Martin; P Doty
Journal:  J Mol Biol       Date:  1971-04-28       Impact factor: 5.469

9.  Self-complementary oligoribonucleotides: adenylic acid-uridylic acid block copolymers.

Authors:  F H Martin; O C Uhlenbeck; P Doty
Journal:  J Mol Biol       Date:  1971-04-28       Impact factor: 5.469

10.  The effect of trypsin digestion on the activities of polynucleotide phosphorylase.

Authors:  P S Fitt; E A Fitt
Journal:  Biochem J       Date:  1967-10       Impact factor: 3.857

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  3 in total

Review 1.  Force as a useful variable in reactions: unfolding RNA.

Authors:  Ignacio Tinoco
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Kinetic analysis of ribozyme-substrate complex formation in yeast.

Authors:  Ramesh S Yadava; Elisabeth M Mahen; Martha J Fedor
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

3.  Profile of Jeffrey Ravetch. Interview by Philip Downey.

Authors:  Jeffrey Ravetch
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-05       Impact factor: 11.205

  3 in total

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