Literature DB >> 10790535

RH maps of bovine chromosomes 15 and 29: conservation of human chromosomes 11 and 5.

M R Amarante1, Y P Yang, S R Kata, C R Lopes, J E Womack.   

Abstract

Comparative mapping data on evolutionary conserved coding sequences and synteny maps between human and cattle are insufficient to define the extent and distribution of conserved segments between these two species, because the order of loci is often rearranged. A 5000-rad cattle whole-genome radiation hybrid (WG-RH) panel was constructed to provide high-resolution comparative maps and also to integrate linkage maps of microsatellites with evolutionary conserved genes and transcripts in a single ordered map. We used the WG-RH panel to construct radiation hybrid maps of bovine Chromosomes (Chrs) 15 and 29 (BTA15 and BTA29), integrating microsatellites from published linkage maps with selected genes. The comprehensive map of BTA15 consists of 24 markers, 13 of which were placed in the framework map. Eleven molecular markers compose the comprehensive map of BTA29, seven of which were placed in the framework map. We identified the homologous regions between bovine Chr 15 (BTA15) and human Chrs 5 and 11 (HSA5 and HSA11), as well as between BTA29 and HSA11. The present study demonstrates that WG-RH mapping is an efficient method for integrating multiple genetic maps into one map and for incorporating monomorphic Type I loci into ordered maps for comparison between species.

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Year:  2000        PMID: 10790535     DOI: 10.1007/s003350010069

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  4 in total

1.  A comparative radiation hybrid map of bovine chromosome 18 and homologous chromosomes in human and mice.

Authors:  Tom Goldammer; Srinivas R Kata; Ronald M Brunner; Ute Dorroch; Hanka Sanftleben; Manfred Schwerin; James E Womack
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  A high resolution RH map of the bovine major histocompatibility complex.

Authors:  Candice L Brinkmeyer-Langford; Christopher P Childers; Krista L Fritz; Ashley L Gustafson-Seabury; Marian Cothran; Terje Raudsepp; James E Womack; Loren C Skow
Journal:  BMC Genomics       Date:  2009-04-24       Impact factor: 3.969

3.  High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly.

Authors:  Aparna Prasad; Thomas Schiex; Stephanie McKay; Brenda Murdoch; Zhiquan Wang; James E Womack; Paul Stothard; Stephen S Moore
Journal:  BMC Genomics       Date:  2007-09-04       Impact factor: 3.969

4.  Integrating linkage and radiation hybrid mapping data for bovine chromosome 15.

Authors:  Warren M Snelling; Mathieu Gautier; John W Keele; Timothy P L Smith; Roger T Stone; Gregory P Harhay; Gary L Bennett; Naoya Ihara; Akiko Takasuga; Haruko Takeda; Yoshikazu Sugimoto; André Eggen
Journal:  BMC Genomics       Date:  2004-10-08       Impact factor: 3.969

  4 in total

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