Literature DB >> 10782296

The use of NMR residual dipolar couplings in aqueous dilute liquid crystalline medium for conformational studies of complex oligosaccharides.

M Martin-Pastor1, C A Bush.   

Abstract

C-H dipolar coupling values were measured for a natural-abundance sample of the pentasaccharide beta-D-Galp-(1-->3)-[alpha-L-Fucp-(1-->4)]-beta-D-GlcNAcp-(1 -->3)-beta-D- Galp-(1-->4)-beta-D-Glcp ('lacto-N-fucopentaose 2') (LNF-2), in a 7.5% solution of dimyristoyl phosphatidylcholine-dihexanoyl phosphatidylcholine bicelle liquid crystals oriented in the NMR magnetic field. Interpretation of the dipolar coupling data and NOE confirms the conformational model for the Lewis(a) trisaccharide epitope based on NOE, molecular dynamics simulations, and scalar coupling data and provided new structural information for the remaining residues of the pentasaccharide. Since residual dipolar coupling provides information on long-range order, it is a valuable complement to other types of NMR data such as NOE and scalar coupling for exploring conformations of complex oligosaccharides.

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Year:  2000        PMID: 10782296     DOI: 10.1016/s0008-6215(99)00237-2

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  6 in total

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Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-11-05       Impact factor: 2.505

2.  Searching and optimizing structure ensembles for complex flexible sugars.

Authors:  Junchao Xia; Claudio J Margulis; David A Case
Journal:  J Am Chem Soc       Date:  2011-09-08       Impact factor: 15.419

3.  Structural monitoring of oligosaccharides through 13C enrichment and NMR observation of acetyl groups.

Authors:  Fei Yu; J H Prestegard
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

4.  Refined structure of a flexible heptasaccharide using 1H-13C and 1H-1H NMR residual dipolar couplings in concert with NOE and long range scalar coupling constants.

Authors:  M Martin-Pastor; C A Bush
Journal:  J Biomol NMR       Date:  2001-02       Impact factor: 2.835

5.  Quantitative conformational analysis of the core region of N-glycans using residual dipolar couplings, aqueous molecular dynamics, and steric alignment.

Authors:  A Almond; J O Duus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

6.  A tool for the prediction of structures of complex sugars.

Authors:  Junchao Xia; Claudio Margulis
Journal:  J Biomol NMR       Date:  2008-10-25       Impact factor: 2.835

  6 in total

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