Literature DB >> 10780396

Positional effect of single bulge nucleotide on PNA(peptide nucleic acid)/DNA hybrid stability.

N Sugimoto1, K Yamamoto, N Satoh.   

Abstract

We report positional effect of bulge nucleotide on PNA/DNA hybrid stability. CD spectra showed that PNA/DNA hybrids required at least seven base pairings at a stem region to form a bulged structure. On the other hand, DNA/DNA could form bulged structure when there are only four base pairings adjacent to the bulge nucleotide. We discuss why PNA requests such a many base pairings to form bulged structure from a nearest neighbor standpoint.

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Year:  1999        PMID: 10780396     DOI: 10.1093/nass/42.1.95

Source DB:  PubMed          Journal:  Nucleic Acids Symp Ser        ISSN: 0261-3166


  4 in total

1.  Detection of BCR-ABL T315I mutation by peptide nucleic acid directed PCR clamping and by peptide nucleic acid FISH.

Authors:  Valentina Rosso; Enrico Bracco; Roberto Pedrola; Sonia Carturan; Elisabetta Signorino; Jessica Petiti; Chiara Calabrese; Paolo Nicoli; Marco De Gobbi; Valentina Gaidano; Daniela Gallo; Stefano Ulisciani; Carmen Fava; Giovanna Rege-Cambrin; Francesco Frassoni; Giuseppe Saglio; Daniela Cilloni
Journal:  Biomark Res       Date:  2015-07-03

2.  A novel assay to detect calreticulin mutations in myeloproliferative neoplasms.

Authors:  Valentina Rosso; Jessica Petiti; Enrico Bracco; Roberto Pedrola; Francesca Carnuccio; Elisabetta Signorino; Sonia Carturan; Chiara Calabrese; Giada Bot-Sartor; Michela Ronconi; Anna Serra; Giuseppe Saglio; Francesco Frassoni; Daniela Cilloni
Journal:  Oncotarget       Date:  2017-01-24

3.  Energetic signatures of single base bulges: thermodynamic consequences and biological implications.

Authors:  Conceição A S A Minetti; David P Remeta; Rian Dickstein; Kenneth J Breslauer
Journal:  Nucleic Acids Res       Date:  2009-11-27       Impact factor: 16.971

4.  Design and application of a novel PNA probe for the detection at single cell level of JAK2V617F mutation in Myeloproliferative Neoplasms.

Authors:  Enrico Bracco; Valentina Rosso; Anna Serra; Francesca Carnuccio; Valentina Gaidano; Paolo Nicoli; Pellegrino Musto; Giuseppe Saglio; Francesco Frassoni; Daniela Cilloni
Journal:  BMC Cancer       Date:  2013-07-18       Impact factor: 4.430

  4 in total

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