Literature DB >> 10775663

Citrobacter freundii tyrosine phenol-lyase: the role of asparagine 185 in modulating enzyme function through stabilization of a quinonoid intermediate.

M V Barbolina1, R S Phillips, P D Gollnick, N G Faleev, T V Demidkina.   

Abstract

Asn185 is an invariant residue in all known sequences of TPL and of closely related tryptophanase and it may be aligned with the Asn194 in aspartate aminotransferase. According to X-ray data, in the holoenzyme and in the Michaelis complex Asn185 does not interact with the cofactor pyridoxal 5'-phosphate, but in the external aldimine a conformational change occurs which is accompanied by formation of a hydrogen bond between Asn185 and the oxygen atom in position 3 of the cofactor. The substitution of Asn185 in TPL by alanine results in a mutant N185A TPL of moderate residual activity (2%) with respect to adequate substrates, L-tyrosine and 3-fluoro-L-tyrosine. The affinities of the mutant enzyme for various amino acid substrates and inhibitors, studied by both steady-state and rapid kinetic techniques, were lower than for the wild-type TPL. This effect mainly results from destabilization of the quinonoid intermediate, and it is therefore concluded that the hydrogen bond between Asn185 and the oxygen at the C-3 position of the cofactor is maintained in the quinonoid intermediate. The relative destabilization of the quinonoid intermediate and external aldimine leads to the formation of large amounts of gem-diamine in reactions of N185A TPL with 3-fluoro-L-tyrosine and L-phenylalanine. For the reaction with 3-fluoro-L-tyrosine it was first possible to determine kinetic parameters of gem-diamine formation by the stopped-flow method. For the reactions of N185A TPL with substrates bearing good leaving groups the observed values of k(cat) could be accounted for by taking into consideration two effects: the decrease in the quinonoid content under steady-state conditions and the increase in the quinonoid reactivity in a beta-elimination reaction. Both effects are due to destabilization of the quinonoid and they counterbalance each other. Multiple kinetic isotope effect studies on the reactions of N185A TPL with suitable substrates, L-tyrosine and 3-fluoro-L-tyrosine, show that the principal mechanism of catalysis, suggested previously for the wild-type enzyme, does not change. In the framework of this mechanism the observed considerable decrease in k(cat) values for reactions of N185A TPL with L-tyrosine and 3-fluoro-L-tyrosine may be ascribed to participation of Asn185 in additional stabilization of the keto quinonoid intermediate.

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Year:  2000        PMID: 10775663     DOI: 10.1093/protein/13.3.207

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  4 in total

1.  CsrA and TnaB coregulate tryptophanase activity to promote exotoxin-induced killing of Caenorhabditis elegans by enteropathogenic Escherichia coli.

Authors:  Shantanu Bhatt; Akwasi Anyanful; Daniel Kalman
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

2.  Structures of apo- and holo-tyrosine phenol-lyase reveal a catalytically critical closed conformation and suggest a mechanism for activation by K+ ions.

Authors:  Dalibor Milić; Dubravka Matković-Calogović; Tatyana V Demidkina; Vitalia V Kulikova; Nina I Sinitzina; Alfred A Antson
Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

Review 3.  In vitro Engineering of Novel Bioactivity in the Natural Enzymes.

Authors:  Vishvanath Tiwari
Journal:  Front Chem       Date:  2016-10-07       Impact factor: 5.221

4.  Insights into the catalytic mechanism of tyrosine phenol-lyase from X-ray structures of quinonoid intermediates.

Authors:  Dalibor Milić; Tatyana V Demidkina; Nicolai G Faleev; Dubravka Matković-Calogović; Alfred A Antson
Journal:  J Biol Chem       Date:  2008-08-20       Impact factor: 5.157

  4 in total

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