Literature DB >> 10753812

Interpretation of chemical shifts and coupling constants in macromolecules.

D A Case1.   

Abstract

Recent developments in NMR spectroscopy, along with advances in computational techniques, have produced new approaches to the interpretation of chemical shifts and spin-spin coupling constants in biomolecules. Quantum chemical studies of useful accuracy are now becoming more routine and are increasingly being used in conjunction with experimental studies to map out expected structural patterns for peptides and oligonucleotides. Topics of recent special interest include spin couplings across hydrogen bonds and patterns of chemical shift anisotropies, in both diamagnetic and paramagnetic proteins.

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Year:  2000        PMID: 10753812     DOI: 10.1016/s0959-440x(00)00068-3

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  21 in total

1.  Modeling 2hJiso(N, N) in nucleic acid base pairs: ab initio characterization of the 2hJ(N, N) tensor in the methyleneimine dimer as a function of hydrogen bond geometry.

Authors:  D L Bryce; R E Wasylishen
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

2.  The structures of the active center in dark-adapted bacteriorhodopsin by solution-state NMR spectroscopy.

Authors:  Heiko Patzelt; Bernd Simon; Antonius terLaak; Brigitte Kessler; Ronald Kühne; Peter Schmieder; Dieter Oesterhelt; Hartmut Oschkinat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

3.  RefDB: a database of uniformly referenced protein chemical shifts.

Authors:  Haiyan Zhang; Stephen Neal; David S Wishart
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

Review 4.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

5.  An evaluation of chemical shift index-based secondary structure determination in proteins: influence of random coil chemical shifts.

Authors:  S P Mielke; V V Krishnan
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

6.  Estimation of protein secondary structure content directly from NMR spectra using an improved empirical correlation with averaged chemical shift.

Authors:  S P Mielke; V V Krishnan
Journal:  J Struct Funct Genomics       Date:  2005-11-09

7.  Distinguishing among structural ensembles of the GB1 peptide: REMD simulations and NMR experiments.

Authors:  Daniel S Weinstock; Chitra Narayanan; Anthony K Felts; Michael Andrec; Ronald M Levy; Kuen-Phon Wu; Jean Baum
Journal:  J Am Chem Soc       Date:  2007-04-03       Impact factor: 15.419

8.  Predicting 13Calpha chemical shifts for validation of protein structures.

Authors:  Jorge A Vila; Myriam E Villegas; Hector A Baldoni; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2007-06-09       Impact factor: 2.835

9.  Structural dynamics of protein backbone phi angles: extended molecular dynamics simulations versus experimental (3) J scalar couplings.

Authors:  Phineus R L Markwick; Scott A Showalter; Guillaume Bouvignies; Rafael Brüschweiler; Martin Blackledge
Journal:  J Biomol NMR       Date:  2009-07-24       Impact factor: 2.835

10.  Enhanced conformational space sampling improves the prediction of chemical shifts in proteins.

Authors:  Phineus R L Markwick; Carla F Cervantes; Barrett L Abel; Elizabeth A Komives; Martin Blackledge; J Andrew McCammon
Journal:  J Am Chem Soc       Date:  2010-02-03       Impact factor: 15.419

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