Literature DB >> 10753809

Collective protein dynamics in relation to function.

H J Berendsen1, S Hayward.   

Abstract

Several techniques for the analysis of the internal motions of proteins are available - separating large collective motions from small, presumably uninteresting motions. Such descriptions are helpful in the characterization of internal motions and provide insight into the energy landscape of proteins. The real challenge, however, is to relate large collective motions to functional properties, such as binding and regulation, or to folding. These issues have been recently addressed in several papers.

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Year:  2000        PMID: 10753809     DOI: 10.1016/s0959-440x(00)00061-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  123 in total

1.  Protein concerted motions in the DNA-human topoisomerase I complex.

Authors:  Giovanni Chillemi; Paola Fiorani; Piero Benedetti; Alessandro Desideri
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

2.  Polymorphism of the epidermal growth factor receptor extracellular ligand binding domain: the dimer interface depends on domain stabilization.

Authors:  Zhiyong Zhang; Willy Wriggers
Journal:  Biochemistry       Date:  2011-02-18       Impact factor: 3.162

3.  Molecular dynamics simulations of peptides and proteins with amplified collective motions.

Authors:  Zhiyong Zhang; Yunyu Shi; Haiyan Liu
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

4.  A fluorescence stopped-flow kinetic study of the conformational activation of alpha-chymotrypsin and several mutants.

Authors:  Gert Verheyden; Janka Matrai; Guido Volckaert; Yves Engelborghs
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

5.  Dynamical transition and proteinquake in photoactive yellow protein.

Authors:  Kazuhito Itoh; Masaki Sasai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-04       Impact factor: 11.205

6.  An analysis of core deformations in protein superfamilies.

Authors:  Alejandra Leo-Macias; Pedro Lopez-Romero; Dmitry Lupyan; Daniel Zerbino; Angel R Ortiz
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

7.  Mechanism of cohesin loading onto chromosomes: a conformational dynamics study.

Authors:  Ozge Kurkcuoglu; Paul A Bates
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

8.  Role of altered sialylation of the I-like domain of beta1 integrin in the binding of fibronectin to beta1 integrin: thermodynamics and conformational analyses.

Authors:  Di Pan; Yuhua Song
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

9.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

10.  Conformational dynamics of a regulator of G-protein signaling protein reveals a mechanism of allosteric inhibition by a small molecule.

Authors:  Harish Vashisth; Andrew J Storaska; Richard R Neubig; Charles L Brooks
Journal:  ACS Chem Biol       Date:  2013-10-24       Impact factor: 5.100

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