Literature DB >> 10753766

Monitoring genome-wide expression in plants.

R Schaffer1, J Landgraf, M Pérez-Amador, E Wisman.   

Abstract

When completed this year, the Arabidopsis genome will represent the first plant genome to be fully sequenced. This sequence information, together with the large collection of expressed sequence tags, has established the basics for new approaches to studying gene expression patterns in plants on a global scale. We can now look at biology from the perspective of the whole genome. This revolution in the study of how all genes in an organism respond to certain stimuli has encouraged us to think in new dimensions. Expression profiles can be determined over a range of experimental conditions and organized into patterns that are diagnostic for the biological state of the cell. The field of genome-wide expression in plants has yet to produce its fruit; however, the current application of microarrays in yeast and human research foreshadows the diverse applications this technology could have in plant biology and agriculture.

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Year:  2000        PMID: 10753766     DOI: 10.1016/s0958-1669(00)00084-7

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  17 in total

1.  Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis.

Authors:  R Schaffer; J Landgraf; M Accerbi; V Simon; M Larson; E Wisman
Journal:  Plant Cell       Date:  2001-01       Impact factor: 11.277

2.  GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags.

Authors:  C Varotto; E Richly; F Salamini; D Leister
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

3.  Transcriptional profiling of wheat caryopsis development using cDNA microarrays.

Authors:  Debbie L Laudencia-Chingcuanco; Boryana S Stamova; Frank M You; Gerard R Lazo; Diane M Beckles; Olin D Anderson
Journal:  Plant Mol Biol       Date:  2007-01-09       Impact factor: 4.076

4.  Induction of the arginine decarboxylase ADC2 gene provides evidence for the involvement of polyamines in the wound response in Arabidopsis.

Authors:  Miguel A Perez-Amador; Jose Leon; Pamela J Green; Juan Carbonell
Journal:  Plant Physiol       Date:  2002-11       Impact factor: 8.340

5.  DNA microarrays for functional plant genomics.

Authors:  Asaph Aharoni; Oscar Vorst
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

6.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Authors:  Rodrigo A Gutierrez; Rob M Ewing; J Michael Cherry; Pamela J Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

Review 7.  Mapping QTLs regulating morpho-physiological traits and yield: case studies, shortcomings and perspectives in drought-stressed maize.

Authors:  Roberto Tuberosa; Silvio Salvi; Maria Corinna Sanguineti; Pierangelo Landi; Marco Maccaferri; Sergio Conti
Journal:  Ann Bot       Date:  2002-06       Impact factor: 4.357

8.  Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

Authors:  Paula Casati; Virginia Walbot
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

9.  Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis.

Authors:  John Price; Ashverya Laxmi; Steven K St Martin; Jyan-Chyun Jang
Journal:  Plant Cell       Date:  2004-07-23       Impact factor: 11.277

10.  Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.

Authors:  Pierre Hilson; Joke Allemeersch; Thomas Altmann; Sébastien Aubourg; Alexandra Avon; Jim Beynon; Rishikesh P Bhalerao; Frédérique Bitton; Michel Caboche; Bernard Cannoot; Vasil Chardakov; Cécile Cognet-Holliger; Vincent Colot; Mark Crowe; Caroline Darimont; Steffen Durinck; Holger Eickhoff; Andéol Falcon de Longevialle; Edward E Farmer; Murray Grant; Martin T R Kuiper; Hans Lehrach; Céline Léon; Antonio Leyva; Joakim Lundeberg; Claire Lurin; Yves Moreau; Wilfried Nietfeld; Javier Paz-Ares; Philippe Reymond; Pierre Rouzé; Goran Sandberg; Maria Dolores Segura; Carine Serizet; Alexandra Tabrett; Ludivine Taconnat; Vincent Thareau; Paul Van Hummelen; Steven Vercruysse; Marnik Vuylsteke; Magdalena Weingartner; Peter J Weisbeek; Valtteri Wirta; Floyd R A Wittink; Marc Zabeau; Ian Small
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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