Literature DB >> 10751720

A public domain image-analysis program for the single-cell gel-electrophoresis (comet) assay.

C Helma1, M Uhl.   

Abstract

The single-cell gel electrophoresis (or comet) assay has gained widespread acceptance as a cheap and simple genotoxicity test, but it requires a computer-assisted image-analysis system. As commercial programs are expensive and inflexible, we decided to develop an image-analysis system based on public domain programs and make it publicly available for the scientific community. Our system is based on the scientific image-processing program NIH Image, and was written in its Pascal-like macro language. User interaction was kept as simple as possible, to enable the measurement of a large number of cells with a few keystrokes. Therefore, the time for image analysis is very low, even on slow computers. The comet macro can be obtained from http://mailbox.univie.ac.at/christoph.helma++ +/comet/, NIH Image is available at http://rsb.info.nih.gov/nih-image/. Both programs are free of charge.

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Year:  2000        PMID: 10751720     DOI: 10.1016/s1383-5718(99)00232-6

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  23 in total

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3.  Automated segmentation of comet assay images using Gaussian filtering and fuzzy clustering.

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5.  DNA cleavage and Trp53 differentially affect SINE transcription.

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9.  Oxygen sensitivity severely limits the replicative lifespan of murine fibroblasts.

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10.  Mismatch repair-dependent G2 checkpoint induced by low doses of SN1 type methylating agents requires the ATR kinase.

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