Literature DB >> 10747153

Fluorescent amplified-fragment length polymorphism genotyping of Salmonella enterica subsp. enterica serovars and comparison with pulsed-field gel electrophoresis typing.

B A Lindstedt1, E Heir, T Vardund, G Kapperud.   

Abstract

We have performed the fluorescently labeled amplified-fragment length polymorphism (FAFLP) method on 97 strains of the food-borne pathogen Salmonella enterica subsp. enterica comprising seven different serovars using the restriction enzymes EcoRI and MseI. From the total FAFLP fingerprinted strains, 81 were compared with pulsed-field gel electrophoresis (PFGE) typing of the same strains. The FAFLP method showed a discriminatory power equal to that of PFGE. We report a fast, robust, and high-resolution adaptation of the AFLP assay for fingerprinting S. enterica subsp. enterica serovars with capillary electrophoresis that can be scaled to high throughput on automated analysis instruments.

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Year:  2000        PMID： 10747153      PMCID： PMC86504     

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  14 in total

1.  A physical map of the Salmonella typhimurium LT2 genome made by using XbaI analysis.

Authors:  S L Liu; K E Sanderson
Journal:  J Bacteriol       Date:  1992-03       Impact factor: 3.490

2.  'Touchdown' PCR to circumvent spurious priming during gene amplification.

Authors:  R H Don; P T Cox; B J Wainwright; K Baker; J S Mattick
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

3.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

4.  Genotypic characterization of Salmonella enteritidis phage types by plasmid analysis, ribotyping, and pulsed-field gel electrophoresis.

Authors:  A M Ridley; E J Threlfall; B Rowe
Journal:  J Clin Microbiol       Date:  1998-08       Impact factor: 5.948

5.  Fast detection of a (CA)18 microsatellite repeat in the IgE receptor gene by capillary electrophoresis with laser-induced fluorescence detection.

Authors:  K Klepárník; Z Malá; Z Havác; M Blazková; L Hollá; P Bocek
Journal:  Electrophoresis       Date:  1998-02       Impact factor: 3.535

6.  High-resolution genotyping of Salmonella strains by AFLP-fingerprinting.

Authors:  H J Aarts; L A van Lith; J Keijer
Journal:  Lett Appl Microbiol       Date:  1998-02       Impact factor: 2.858

Review 7.  Molecular epidemiology: application of contemporary techniques to the typing of microorganisms.

Authors:  J N Maslow; M E Mulligan; R D Arbeit
Journal:  Clin Infect Dis       Date:  1993-08       Impact factor: 9.079

Review 8.  Epidemiology of foodborne diseases: a worldwide review.

Authors:  E C Todd
Journal:  World Health Stat Q       Date:  1997

9.  Evaluation of the DNA fingerprinting method AFLP as an new tool in bacterial taxonomy.

Authors:  P Janssen; R Coopman; G Huys; J Swings; M Bleeker; P Vos; M Zabeau; K Kersters
Journal:  Microbiology       Date:  1996-07       Impact factor: 2.777

10.  Multinational outbreak of Salmonella enterica serotype Newport infections due to contaminated alfalfa sprouts.

Authors:  C A Van Beneden; W E Keene; R A Strang; D H Werker; A S King; B Mahon; K Hedberg; A Bell; M T Kelly; V K Balan; W R Mac Kenzie; D Fleming
Journal:  JAMA       Date:  1999-01-13       Impact factor: 56.272
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  17 in total

1.  Comparative fingerprinting analysis of Campylobacter jejuni subsp. jejuni strains by amplified-fragment length polymorphism genotyping.

Authors:  B A Lindstedt; E Heir; T Vardund; K K Melby; G Kapperud
Journal:  J Clin Microbiol       Date:  2000-09       Impact factor: 5.948

2.  Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica.

Authors:  Fenyun Liu; Rodolphe Barrangou; Peter Gerner-Smidt; Efrain M Ribot; Stephen J Knabel; Edward G Dudley
Journal:  Appl Environ Microbiol       Date:  2011-01-28       Impact factor: 4.792

3.  Identification of Clostridium species and DNA fingerprinting of Clostridium perfringens by amplified fragment length polymorphism analysis.

Authors:  Riikka Keto-Timonen; Annamari Heikinheimo; Erkki Eerola; Hannu Korkeala
Journal:  J Clin Microbiol       Date:  2006-09-13       Impact factor: 5.948

4.  Molecular typing and epidemiological study of Salmonella enterica serotype Typhimurium isolates from cattle by fluorescent amplified-fragment length polymorphism fingerprinting and pulsed-field gel electrophoresis.

Authors:  Y Tamada; Y Nakaoka; K Nishimori; A Doi; T Kumaki; N Uemura; K Tanaka; S I Makino; T Sameshima; M Akiba; M Nakazawa; I Uchida
Journal:  J Clin Microbiol       Date:  2001-03       Impact factor: 5.948

5.  Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).

Authors:  Fenyun Liu; Subhashinie Kariyawasam; Bhushan M Jayarao; Rodolphe Barrangou; Peter Gerner-Smidt; Efrain M Ribot; Stephen J Knabel; Edward G Dudley
Journal:  Appl Environ Microbiol       Date:  2011-05-13       Impact factor: 4.792

6.  Outbreak of Salmonella Dublin-associated abortion in Danish fur farms.

Authors:  Hans Henrik Dietz; Mariann Chriél; Thomas Holmen Andersen; Jens Christian Jørgensen; Mia Torpdahl; Hans Pedersen; Karl Pedersen
Journal:  Can Vet J       Date:  2006-12       Impact factor: 1.008

7.  Efficient DNA fingerprinting of Clostridium botulinum types A, B, E, and F by amplified fragment length polymorphism analysis.

Authors:  Riikka Keto-Timonen; Mari Nevas; Hannu Korkeala
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

8.  Molecular genotyping of a large, multicentric collection of tubercle bacilli indicates geographical partitioning of strain variation and has implications for global epidemiology of Mycobacterium tuberculosis.

Authors:  Niyaz Ahmed; Mahfooz Alam; K Rajender Rao; Farhana Kauser; N Ashok Kumar; Nazia N Qazi; Vartul Sangal; V D Sharma; Ram Das; V M Katoch; K J R Murthy; Sujai Suneetha; S K Sharma; Leonardo A Sechi; Robert H Gilman; Seyed E Hasnain
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

9.  Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar typhimurium reveals phage-type- specific markers and potential for microarray typing.

Authors:  Honghua Hu; Ruiting Lan; Peter R Reeves
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

10.  Molecular characterization of multidrug-resistant Salmonella enterica subsp. enterica serovar Typhimurium isolates from swine.

Authors:  Wondwossen Abebe Gebreyes; Craig Altier
Journal:  J Clin Microbiol       Date:  2002-08       Impact factor: 5.948
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