Literature DB >> 10745116

Coarse-grained reverse engineering of genetic regulatory networks.

M Wahde1, J Hertz.   

Abstract

We have modeled genetic regulatory networks in the framework of continuous-time recurrent neural networks. A method for determining the parameters of such networks, given expression level time series data, is introduced and evaluated using artificial data. The method is also applied to a set of actual expression data from the development of rat central nervous system.

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Year:  2000        PMID: 10745116     DOI: 10.1016/s0303-2647(99)00090-8

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  17 in total

1.  Reverse engineering gene networks using singular value decomposition and robust regression.

Authors:  M K Stephen Yeung; Jesper Tegnér; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

2.  Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.

Authors:  Jesper Tegner; M K Stephen Yeung; Jeff Hasty; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-01       Impact factor: 11.205

3.  Identification of genetic networks.

Authors:  Momiao Xiong; Jun Li; Xiangzhong Fang
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

4.  The identification of induction chemo-sensitivity genes of laryngeal squamous cell carcinoma and their clinical utilization.

Authors:  Lianhe Li; Ru Wang; Shizhi He; Xixi Shen; Fanyong Kong; Shuchun Li; Huanhu Zhao; Meng Lian; Jugao Fang
Journal:  Eur Arch Otorhinolaryngol       Date:  2018-09-28       Impact factor: 2.503

Review 5.  Neural model of gene regulatory network: a survey on supportive meta-heuristics.

Authors:  Surama Biswas; Sriyankar Acharyya
Journal:  Theory Biosci       Date:  2016-04-05       Impact factor: 1.919

6.  A parallel algorithm for reverse engineering of biological networks.

Authors:  Jason N Bazil; Feng Qi; Daniel A Beard
Journal:  Integr Biol (Camb)       Date:  2011-11-14       Impact factor: 2.192

7.  Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data.

Authors:  Christian Bender; Frauke Henjes; Holger Fröhlich; Stefan Wiemann; Ulrike Korf; Tim Beissbarth
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

Review 8.  Using evolutionary computations to understand the design and evolution of gene and cell regulatory networks.

Authors:  Alexander Spirov; David Holloway
Journal:  Methods       Date:  2013-05-30       Impact factor: 3.608

9.  Stochastic S-system modeling of gene regulatory network.

Authors:  Ahsan Raja Chowdhury; Madhu Chetty; Rob Evans
Journal:  Cogn Neurodyn       Date:  2015-06-14       Impact factor: 5.082

10.  Comparison of evolutionary algorithms in gene regulatory network model inference.

Authors:  Alina Sîrbu; Heather J Ruskin; Martin Crane
Journal:  BMC Bioinformatics       Date:  2010-01-27       Impact factor: 3.169

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