Literature DB >> 10742169

Crystal structure of the S15-rRNA complex.

A Nikulin1, A Serganov, E Ennifar, S Tishchenko, N Nevskaya, W Shepard, C Portier, M Garber, B Ehresmann, C Ehresmann, S Nikonov, P Dumas.   

Abstract

In bacterial ribosomes, the small (30S) ribosomal subunit is composed of 16S rRNA and 21 distinct proteins. Ribosomal protein S15 is of particular interest because it binds primarily to 16S rRNA and is required for assembly of the small subunit and for intersubunit association, thus representing a key element in the assembly of a whole ribosome. Here we report the 2.8 ¿ resolution crystal structure of the highly conserved S15-rRNA complex. Protein S15 interacts in the minor groove with a G-U/G-C motif and a three-way junction. The latter is constrained by a conserved base triple and stacking interactions, and locked into place by magnesium ions and protein side chains, mainly through interactions with the unique three-dimensional geometry of the backbone. The present structure gives insights into the dual role of S15 in ribosome assembly and translational regulation.

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Year:  2000        PMID: 10742169     DOI: 10.1038/74028

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  22 in total

1.  Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules.

Authors:  Harold D Kim; G Ulrich Nienhaus; Taekjip Ha; Jeffrey W Orr; James R Williamson; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

2.  Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT.

Authors:  Yinshan Yang; Nathalie Declerck; Xavier Manival; Stéphane Aymerich; Michel Kochoyan
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

3.  Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns.

Authors:  Peter S Klosterman; Donna K Hendrix; Makio Tamura; Stephen R Holbrook; Steven E Brenner
Journal:  Nucleic Acids Res       Date:  2004-04-30       Impact factor: 16.971

4.  Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation.

Authors:  Nathalie Mathy; Olivier Pellegrini; Alexander Serganov; Dinshaw J Patel; Chantal Ehresmann; Claude Portier
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

5.  Ribosomal protein S7 from Escherichia coli uses the same determinants to bind 16S ribosomal RNA and its messenger RNA.

Authors:  F Robert; L Brakier-Gingras
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

6.  Topology of three-way junctions in folded RNAs.

Authors:  Aurélie Lescoute; Eric Westhof
Journal:  RNA       Date:  2006-01       Impact factor: 4.942

7.  The conformational landscape of the ribosomal protein S15 and its influence on the protein interaction with 16S RNA.

Authors:  Thomas Créty; Thérèse E Malliavin
Journal:  Biophys J       Date:  2007-01-26       Impact factor: 4.033

8.  Molecular dynamics and principal components analysis of human telomeric quadruplex multimers.

Authors:  Shozeb Haider; Gary N Parkinson; Stephen Neidle
Journal:  Biophys J       Date:  2008-03-28       Impact factor: 4.033

9.  Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimation.

Authors:  Jian Zhang; Joseph Dundas; Ming Lin; Rong Chen; Wei Wang; Jie Liang
Journal:  RNA       Date:  2009-10-28       Impact factor: 4.942

10.  Salt-dependent folding energy landscape of RNA three-way junction.

Authors:  Gengsheng Chen; Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

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